PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.188
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 380aa    MW: 42439.8 Da    PI: 7.1406
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.188genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1065.9e-33481902110
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........e 74 
                                    g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++s+         +
  evm.model.supercontig_14.188  48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPVPPESFGlnhqamllS 128
                                   689*************************************************************99999444322223333 PP

                           TCP  75 aesssssasnsssg..............................kaaksaakskksqksaasalnl 110
                                   +++   s+sn+  +                              +++k+a k+  ++++++  + +
  evm.model.supercontig_14.188 129 HHELGTSQSNK--EgskmsnnvnwedpggliprssfwnsdsfwrSKSKEALKEDTTSEKEN--WTK 190
                                   33333332222..133555566677777777766666665554311111112222111111..222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.46950108IPR017887Transcription factor TCP subgroup
PfamPF036347.3E-3150197IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MIATSKETDS STNQEGNTND GKVTKASSSS SPWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPVPPESFGL  120
NHQAMLLSHH ELGTSQSNKE GSKMSNNVNW EDPGGLIPRS SFWNSDSFWR SKSKEALKED  180
TTSEKENWTK RNEEEKEESS EGHHDHGEVS TNNFLNRGNQ NSLPGLLNNN AVPYGSYYHF  240
EPSNFPVSHL GSHGFTSQQT EDHHHHHLHN SHVAPFLPST LSLSSGSQIL VCPPGTTTQT  300
LFPSHGAASV EIDPRQLNQF QMVNSAASQN LLTNSMSPLP YSLNQSMRPF HFNMTHRFLH  360
SDTSRGSTQA EKEQEYPPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1855109155Putative transcription factor PCF6
5zkt_B1e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905413.10.0transcription factor TCP13
TrEMBLA0A061EN210.0A0A061EN21_THECC; Plastid transcription factor 1, putative isoform 1
STRINGevm.model.supercontig_14.1880.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.18e-51plastid transcription factor 1