PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.18
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31462.3 Da    PI: 6.5156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.18genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-1872124456
                                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                  + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  evm.model.supercontig_14.18  72 KKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 124
                                  4568889*********************************************9 PP
2HD-ZIP_I/II127.75.1e-4170160191
                  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                  ekk+rl+ eqvk+LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdye Lk++++alk++n++L++
  evm.model.supercontig_14.18  70 EKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKKQFEALKADNDALQA 151
                                  69******************************************************************************** PP

                  HD-ZIP_I/II  83 eveeLreel 91 
                                  ++++L++el
  evm.model.supercontig_14.18 152 QNNKLNAEL 160
                                  ******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.87666126IPR001356Homeobox domain
SuperFamilySSF466893.29E-1966128IPR009057Homeodomain-like
SMARTSM003891.5E-1769130IPR001356Homeobox domain
CDDcd000865.69E-1671127No hitNo description
PfamPF000462.7E-1572124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-1974133IPR009057Homeodomain-like
PRINTSPR000319.6E-697106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000319.6E-6106122IPR000047Helix-turn-helix motif
PfamPF021833.4E-14126166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAFPSSHGFM FQPLDDSPSP TSLPSCPPHL FHGGGGFMMK RSMSFSGVEK REEIHGGDDE  60
LSDDGLQGGE KKKRLNLEQV KALEKSFELG NKLEPERKMQ LAKALGLQPR QIAIWFQNRR  120
ARWKTKQLEK DYEILKKQFE ALKADNDALQ AQNNKLNAEL LALKNKDCNE MNVKKEADQG  180
SWSNVSDSSC DINLDISRTA AVVSSSPVSS SQLSGRNFLS SSSSIRPPTS MTQLLQASSR  240
SDLHCQMIQQ EETFCNMFNP MEDQQQGFWP WSDQQQNFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.18
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905273.10.0homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT08e-93ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A1R3I9H91e-132A0A1R3I9H9_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_14.180.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.14e-73homeobox protein 20