PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_14.126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 399aa MW: 44653 Da PI: 4.3653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g evm.model.supercontig_14.126 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-31 | 41 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 42 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-14 | 42 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.7E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MARKRKANNI EGESNMGSNW DEMVKEAAEV AALGGTRRAR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP CASSSSPALP SKITNLLLQR 120 LKARNNPSPQ FDSASNSSPP INQNQLQQSP VHEELNHNHH HHFSETFTED FLDLPDDYVP 180 CNDDYISNTN SNLTPANSFD YNSASFESSL LTEKEPEVGS TQSDGLEIEE EEEEEEEEEE 240 EGIDFGFIDE IGSGCYSYSA FEIAEEIEKP GGNCLDAEAG LMQLRDEMER MNYERKFSAS 300 LYAFNGISEC LRLKLGAGNL NGRRRSEQLI TKLQNACNEK NKMEEEEKKL AKEDDEVKLE 360 KKITESSSMD THSSSSSSLN SDGELWGSLD LPPICFVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_14.126 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905341.1 | 0.0 | ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A061EEW9 | 1e-126 | A0A061EEW9_THECC; WIN1-like protein, putative | ||||
STRING | evm.model.supercontig_14.126 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18279 | 8 | 9 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_14.126 |