PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.101
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 347aa    MW: 39612.6 Da    PI: 7.1645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.101genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68.1e-56161421129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+++yL +k+ ++ + + ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++g
  evm.model.supercontig_14.101  16 LPPGFRFHPTDEELISHYLSQKALDSCFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAG 95 
                                   79***********************99888.89***************888999*************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   yWkatgkd+e+++ +++lvg+kktLvfykgrapkgekt+Wvmhe+rle
  evm.model.supercontig_14.101  96 YWKATGKDREIYK-GKTLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 142
                                   ************9.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6312166IPR003441NAC domain
PROSITE profilePS5100558.70216166IPR003441NAC domain
PfamPF023655.0E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDNVSKDNTE DEQMELPPGF RFHPTDEELI SHYLSQKALD SCFCARAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDREIYKGK TLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEFR LEGKYSMYNF PQRAKNEWVI CRVFQKSCGN KKTHVSGMVR  180
LSSYENNFSP SLLPPLMDSS PYNSDTRTTT VGESSHVTCF SDAMETQRKV QEDTIDTFNT  240
SFLPSSSSSN PNSATLPASL LISKTLHPNS FYCNQILQTH YPDSVMNQEQ SILKMLIENQ  300
GVNSRRNPKS ELSQDSMVSS HELIQSSLED PSTPAGPVDL YCLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-531317214171NO APICAL MERISTEM PROTEIN
1ut4_B5e-531317214171NO APICAL MERISTEM PROTEIN
1ut7_A5e-531317214171NO APICAL MERISTEM PROTEIN
1ut7_B5e-531317214171NO APICAL MERISTEM PROTEIN
3swm_A6e-531317217174NAC domain-containing protein 19
3swm_B6e-531317217174NAC domain-containing protein 19
3swm_C6e-531317217174NAC domain-containing protein 19
3swm_D6e-531317217174NAC domain-containing protein 19
3swp_A6e-531317217174NAC domain-containing protein 19
3swp_B6e-531317217174NAC domain-containing protein 19
3swp_C6e-531317217174NAC domain-containing protein 19
3swp_D6e-531317217174NAC domain-containing protein 19
4dul_A5e-531317214171NAC domain-containing protein 19
4dul_B5e-531317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.101
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905425.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-131NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1D6YZF20.0A0A1D6YZF2_CARPA; NAC12
STRINGevm.model.supercontig_14.1010.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-121NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]