PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_138.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 141aa MW: 15626.9 Da PI: 4.692 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 28 | 68 | 6 | 44 |
HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 e d+ + +a + ++ + +W++Ia ++ g+tl+++k+++ evm.model.supercontig_138.8 28 REQDKAFENALATYPEDstdRWEKIAGDVP-GKTLEEIKHHY 68 699***************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.2E-4 | 22 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-7 | 27 | 68 | No hit | No description |
SuperFamily | SSF46689 | 1.79E-9 | 27 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-6 | 28 | 68 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MGITVREFPG IIRIDAVDEA GGSSSRSREQ DKAFENALAT YPEDSTDRWE KIAGDVPGKT 60 LEEIKHHYDL LVDDVNRIES GFVPLPAYNS FEGSTSQARD EGTDKKVSHV GHYSESNHGS 120 KSRSDQERRK GIAWKEDEDS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 21 | 94 | 6 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_138.8 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889856.1 | 4e-87 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 8e-42 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A314XTJ9 | 3e-59 | A0A314XTJ9_PRUYE; Transcription factor SRM1 | ||||
STRING | evm.model.supercontig_138.8 | 1e-98 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23121 | 3 | 4 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-44 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_138.8 |
Publications ? help Back to Top | |||
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