PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_138.12
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 269aa    MW: 30358.4 Da    PI: 6.4023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_138.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-111154344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  +W+ e d+ + +a + ++ +   +W++Ia  ++ g+tl+++k+++
  evm.model.supercontig_138.12 11 SWSREQDKAFENALATYPEDstdRWERIAGDVP-GKTLEEIKHHY 54
                                  7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-8860IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-111066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-51058IPR009057Homeodomain-like
PROSITE profilePS500906.9461058IPR017877Myb-like domain
PfamPF002494.6E-81154IPR001005SANT/Myb domain
CDDcd001671.43E-71154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTVDEAGGSS SWSREQDKAF ENALATYPED STDRWERIAG DVPGKTLEEI KHHYDLLVDD  60
VNRIESGCVP LPAYNSSEGS TSQAGDEGTG KKGSHVGHYS ESNHGSKSRS DQERRKGIAW  120
TEDEHRGPVI PSNWFTNLQM VFGLFAFAIQ NWMEAEAVYH LCFSLCLFAK AKNSKENKYK  180
KKTPKSLILL LNGTEISLAF GFVWCALAYV FILLWEVNKA VTFVPLSIFL LVSRIEWVLA  240
RMTEYLFFFS LLWDKKENYR RAPGVPPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-18780679RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_138.12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_138.120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2312134
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-52MYB family protein