PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1379.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 311aa    MW: 35540.5 Da    PI: 4.4532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1379.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-1884138357
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                   k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k+
  evm.model.supercontig_1379.1  84 KKRRLTATQVQFLERSFEVENKLEPERKLQLAKELGLQPRQVAIWFQNRRARFKN 138
                                   56689***********************************************995 PP
2HD-ZIP_I/II127.46.2e-4184174292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   kkrrl++ qv++LE+sFe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlE+dy++Lk+++d+lk+++++L k
  evm.model.supercontig_1379.1  84 KKRRLTATQVQFLERSFEVENKLEPERKLQLAKELGLQPRQVAIWFQNRRARFKNKQLERDYDSLKASFDKLKADHDKLLK 164
                                   9******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLreelk 92 
                                   e+e+L++el 
  evm.model.supercontig_1379.1 165 ENEALKQELV 174
                                   ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1972141IPR009057Homeodomain-like
PROSITE profilePS5007117.11979139IPR001356Homeobox domain
SMARTSM003898.8E-1881143IPR001356Homeobox domain
CDDcd000869.21E-1782140No hitNo description
PfamPF000464.9E-1684137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-2086147IPR009057Homeodomain-like
PRINTSPR000316.5E-6110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6119135IPR000047Helix-turn-helix motif
PfamPF021838.1E-16139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGIKVCGNP NMALFLQNEK LPSSPQLLES LWIPTSSNLH GSRSMVDFEK VTEGEAIDAG  60
FFQAMDREEN VDEDYDTCLN PPGKKRRLTA TQVQFLERSF EVENKLEPER KLQLAKELGL  120
QPRQVAIWFQ NRRARFKNKQ LERDYDSLKA SFDKLKADHD KLLKENEALK QELVSIQNKL  180
IHQDKMKEKN LEPADQEINL SNEDEPNLPL MMTLKQEDVS SAKSDVFDSD SPHYTDGNQS  240
SLGEPADSSH VFEADHSDFS QDEDDNNLSK SLLQPQWFLK MEGDSTYGHD DMAANSCSFV  300
FDQPIWSWLY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893147.10.0homeobox-leucine zipper protein ATHB-54-like
TrEMBLA0A2N9EC561e-116A0A2N9EC56_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_1379.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-38homeobox 1