PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_13.95 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20001.1 Da PI: 10.6517 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.7 | 4.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrngilKKA+ELS+LCdae a++ifs++gk + ++s evm.model.supercontig_13.95 9 KRIENPTSRQVTFSKRRNGILKKAFELSILCDAELALLIFSPSGKAFQFAS 59 79*******************************************999985 PP | |||||||
2 | K-box | 75.2 | 1.8e-25 | 81 | 171 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++ ++++e+++ e++ Lk+ i nL+ Rhl Ged+++L +k+L++Le+qL+ +++++Rs+K ++l ++++ l++ +l+e evm.model.supercontig_13.95 81 NQRTTTTEYWRCEIEELKRSIINLEARTRHLCGEDITTLGVKDLKHLERQLKIGVERVRSRKRRILSDNVNLLKRTYCALKE 162 4678899******************999****************************************************** PP K-box 90 enkaLrkkl 98 en+ L+kk+ evm.model.supercontig_13.95 163 ENTHLQKKV 171 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.244 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-31 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.64E-37 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 3.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-22 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.514 | 87 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRGKVELKR IENPTSRQVT FSKRRNGILK KAFELSILCD AELALLIFSP SGKAFQFASH 60 DLDRTIAKYR NHMGLSNSAY NQRTTTTEYW RCEIEELKRS IINLEARTRH LCGEDITTLG 120 VKDLKHLERQ LKIGVERVRS RKRRILSDNV NLLKRTYCAL KEENTHLQKK VS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 7e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 7e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 7e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 6e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 6e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 6e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 6e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_13.95 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905677.1 | 1e-123 | MADS-box transcription factor 23-like isoform X3 | ||||
TrEMBL | A0A2R6PSH8 | 2e-85 | A0A2R6PSH8_ACTCH; MADS-box transcription factor (Fragment) | ||||
STRING | evm.model.supercontig_13.95 | 1e-124 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17630 | 7 | 8 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.1 | 4e-46 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_13.95 |