PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_13.83 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25445 Da PI: 8.1704 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.5e-15 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +grWvAeI+d s + r +lg+f+ +eeAa a++ a++ l+g evm.model.supercontig_13.83 47 RYLGVRQRA-SGRWVAEIKDSS---LKLRLWLGTFDRPEEAALAYDVAARILRG 96 799***999.7*********42...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.56E-27 | 46 | 103 | No hit | No description |
PROSITE profile | PS51032 | 19.006 | 47 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-9 | 47 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-18 | 47 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.3E-29 | 47 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-26 | 47 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MECHKDQIMN PPSSNNPSDH HHHQTSSPIF HNDQNRSRRR NHDGVKRYLG VRQRASGRWV 60 AEIKDSSLKL RLWLGTFDRP EEAALAYDVA ARILRGRNAK TNFHGGAGVD NATHVFCSRF 120 VRNPRVHQLL LRHARSSSLG TTPVSIDDRG VEMGNRVDSA DKTESIVEET IFCSSFSGSD 180 HDDGERGCWN YSKFSGSCKV YSSVIVAPSF SDPSCSSSIT GREKEEDG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_13.83 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905489.1 | 1e-170 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | B9RE64 | 2e-49 | B9RE64_RICCO; Uncharacterized protein | ||||
STRING | evm.model.supercontig_13.83 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17770 | 8 | 10 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-21 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_13.83 |