PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_13.253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 26055 Da PI: 5.0739 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 117 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f++ +Aaka++ a+ k++g evm.model.supercontig_13.253 117 HYRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFDSDVDAAKAYDCAAFKFRG 167 8********.**********9...6566**********99************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 116 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.62E-29 | 116 | 175 | No hit | No description |
SMART | SM00380 | 6.4E-35 | 117 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 117 | 176 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-12 | 117 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 117 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-13 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-13 | 157 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
THNQIQFIPT SSFLLIFLSY ISLSFSMATL EESSTLELIR QHLLEDFSTD LDFDSSFLSA 60 LQFNFNPQYK QEEPDSPISD THNQFLPEIF LHVTSPEPGV SASCTEIMEP DGEERKHYRG 120 VRRRPWGKFA AEIRDPNRKG SRIWLGTFDS DVDAAKAYDC AAFKFRGRKA ILNFPLEAGK 180 CGPPATTGRK RRREKKGVES PERRWVEEEE DGDQSSPVSG KRVTASEDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-26 | 116 | 176 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 192 | RKRRR |
2 | 188 | 194 | RKRRREK |
3 | 188 | 195 | RKRRREKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_13.253 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX532990 | 0.0 | JX532990.1 Carica papaya ethylene-responsive transcription factor 3 (ERF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905462.1 | 1e-169 | ethylene-responsive transcription factor ERF106 | ||||
Swissprot | Q9LY05 | 3e-56 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | T1QCY4 | 1e-147 | T1QCY4_CARPA; Ethylene-responsive transcription factor 3 | ||||
STRING | evm.model.supercontig_13.253 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3229 | 27 | 66 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_13.253 |
Publications ? help Back to Top | |||
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