PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.250
Common NameAt5g07580-like
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 248aa    MW: 28023.6 Da    PI: 8.8769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.250genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19116166255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  evm.model.supercontig_13.250 116 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAFAYDRAAYRMRG 166
                                   7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.9E-32115175IPR001471AP2/ERF domain
PROSITE profilePS5103224.236116174IPR001471AP2/ERF domain
SMARTSM003805.1E-38116180IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-23116176IPR016177DNA-binding domain
CDDcd000185.78E-30116175No hitNo description
PfamPF008473.1E-13116166IPR001471AP2/ERF domain
PRINTSPR003671.0E-10117128IPR001471AP2/ERF domain
PRINTSPR003671.0E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAVEYHFPHH RSSSFTSLIP CLTENWGALP LKVDDSEDMI IYNSLRDALH FGWSPLDLTE  60
RTVKAEPTDE LEITAPVKQG INQQLESAYV APKSENGSVS SPERQEKILQ KPRGRHYRGV  120
RQRPWGKFAA EIRDPAKNGA RVWLGTYETA EEAAFAYDRA AYRMRGSKAL LNFPHRLGSN  180
EPEPVRITAK RREPEPSTRL ASDSDLAKRL KASASAKEAE LDMERVNTLQ FQYRMGYVPV  240
GEQLLVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-37113181270ATERF1
3gcc_A6e-37113181270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7773720.0KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905730.10.0ethylene-responsive transcription factor 2-like
SwissprotQ9LW507e-95ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLT1SFS00.0T1SFS0_CARPA; Ethylene responsive element binding factor-like
STRINGevm.model.supercontig_13.2500.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-47ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Huang CY, et al.
    Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5
    [PMID:23940319]