PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_13.250 | ||||||||
Common Name | At5g07580-like | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 28023.6 Da PI: 8.8769 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 116 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g evm.model.supercontig_13.250 116 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAFAYDRAAYRMRG 166 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.9E-32 | 115 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.236 | 116 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-38 | 116 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-23 | 116 | 176 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.78E-30 | 116 | 175 | No hit | No description |
Pfam | PF00847 | 3.1E-13 | 116 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAVEYHFPHH RSSSFTSLIP CLTENWGALP LKVDDSEDMI IYNSLRDALH FGWSPLDLTE 60 RTVKAEPTDE LEITAPVKQG INQQLESAYV APKSENGSVS SPERQEKILQ KPRGRHYRGV 120 RQRPWGKFAA EIRDPAKNGA RVWLGTYETA EEAAFAYDRA AYRMRGSKAL LNFPHRLGSN 180 EPEPVRITAK RREPEPSTRL ASDSDLAKRL KASASAKEAE LDMERVNTLQ FQYRMGYVPV 240 GEQLLVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-37 | 113 | 181 | 2 | 70 | ATERF1 |
3gcc_A | 6e-37 | 113 | 181 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_13.250 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC777372 | 0.0 | KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905730.1 | 0.0 | ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 7e-95 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | T1SFS0 | 0.0 | T1SFS0_CARPA; Ethylene responsive element binding factor-like | ||||
STRING | evm.model.supercontig_13.250 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-47 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_13.250 |
Publications ? help Back to Top | |||
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