PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.248
Common Name3, At5g61620-like
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 320aa    MW: 34590.7 Da    PI: 9.9845
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.248genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.1e-1489134247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   ++W++eE+ l++++ +++G+g+W  I++++ k+Rt+ q+ s+ qky
  evm.model.supercontig_13.248  89 NPWSEEEHRLFLNGLEKMGKGDWIGISKKFVKTRTPTQIASHAQKY 134
                                   69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1183139IPR017930Myb domain
SuperFamilySSF466895.98E-1685139IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-1586137IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-1187133IPR009057Homeodomain-like
SMARTSM007171.9E-987137IPR001005SANT/Myb domain
PfamPF002491.9E-1189134IPR001005SANT/Myb domain
CDDcd001672.12E-990135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVKESARKCG HCGLNGHNSR TCNGNGGDKS SFRLFGVDIV ENKEPAIVKK SQSFGDLQPL  60
ADKHEATDSG YSSDSQINSK KRSERKKGNP WSEEEHRLFL NGLEKMGKGD WIGISKKFVK  120
TRTPTQIASH AQKYFLFLAS KDKRKRRTSV FDVALEQSEP KVEDSSDGTP ETLPQTNEGM  180
PVLEAANAGA TSMQSANTVG ITQQASNSPS GPVPTHFPLF PLIPASAISN YRRNGGRKIL  240
MPLPSPYVTV MNNGIPIRYV QLAQSSWNGR VSLQPISAGP ATSISSSSRT DPLELTLNGP  300
SNPNSQTSNT HPNDVINAQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7773721e-146KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905522.10.0probable transcription factor At5g61620
TrEMBLT1SFX50.0T1SFX5_CARPA; Myb-like transcription factor family protein
STRINGevm.model.supercontig_13.2480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-57MYB_related family protein
Publications ? help Back to Top
  1. Huang CY, et al.
    Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5
    [PMID:23940319]