PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.247
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 384aa    MW: 42599.8 Da    PI: 8.4528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.247genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09166211347
                                   SS-HHH.HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteE.dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +W +eE + l++ + +++G+g+W  I++++ k+Rt+ q+ s+ q+y
  evm.model.supercontig_13.247 166 PWREEEgHRLFLAGLEKMGKGDWIGISKKFVKTRTRTQIASHAQNY 211
                                   7888887999***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.597159216IPR017930Myb domain
SMARTSM007172.1E-5163214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-7165212IPR009057Homeodomain-like
PfamPF002491.2E-6166211IPR001005SANT/Myb domain
CDDcd001672.21E-6166212No hitNo description
TIGRFAMsTIGR015574.0E-10167214IPR006447Myb domain, plants
SuperFamilySSF466897.02E-10170215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVKESPRKCG RRWLYGHNSR TCKGNGGENS SFRLFGADTV ENKEPAIVKK SQSSGDLQHL  60
VGKHDATDCG YSSDSQINSK KRTQRKKEKQ REKNLRDEID EVNDSGLPAE LIWSWDFVEE  120
QLRLWKNGLT VNLSHVFGSY QDLAFGFLFS RIKSKLRKKI NSEGDPWREE EGHRLFLAGL  180
EKMGKGDWIG ISKKFVKTRT RTQIASHAQN YFHRLALEDK SKRRAIIFDI SLEQSEPNVE  240
DSSHGTPESL PQVNEGMPVM EAANAGSTPM QSATTVEVTQ QASDNPPIGV PTHFPLLALV  300
PASDVSDYRG NEGGRILMTS PSPFVAVMNY GIPTSYVQLA QKLTEPVPAT SVSSSTGSDP  360
LQLTLTRSQA THPNDVINMP DNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.247
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7773721e-144KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905689.11e-122probable transcription factor At5g61620
TrEMBLT1SFX30.0T1SFX3_CARPA; Myb-like transcription factor family protein
STRINGevm.model.supercontig_13.2470.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-32MYB_related family protein