PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_13.246
Common Name1, At5g61620-like
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 326aa    MW: 34672 Da    PI: 10.0158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_13.246genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-1389134247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   ++W++eE+ l++ + +++G+g+W  I++++ ++Rt+ q+ s+ qky
  evm.model.supercontig_13.246  89 NPWSEEEHRLFLAGLEKMGKGDWIGISKKFVNTRTPTQIASHAQKY 134
                                   69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.38483139IPR017930Myb domain
SuperFamilySSF466893.66E-1684140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1486137IPR006447Myb domain, plants
SMARTSM007171.9E-1087137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-1187133IPR009057Homeodomain-like
PfamPF002494.4E-1189134IPR001005SANT/Myb domain
CDDcd001671.52E-990135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVKESARKCG HCGLNGHNSR TCNGNGGDKS SFRLFGVDIL ENKEPAIVKK SRSLGDLQPL  60
ADKHEAADSG YSSDTQIISQ KSTERKKGNP WSEEEHRLFL AGLEKMGKGD WIGISKKFVN  120
TRTPTQIASH AQKYFLRLAS IDKRKRRTSV FDITLEQSKS KIEDFSNGNP ETLPQGMPVM  180
EAANAGANSM QSANGVGVTQ QASNSPSVPV PTHFPLLPLI PASAVSNYRR NGGKILMPLP  240
SPFVSVMNYG IPTSYVQLAQ SLWNVGSTGG VGTQPLGLLG PISAGPATSI SSSTRSDPLG  300
LTLNGPSNPN SQTSNTNPNE VINGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_13.246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7773721e-162KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905521.10.0probable transcription factor At5g61620
SwissprotQ9FKF96e-55M5162_ARATH; Probable transcription factor At5g61620
TrEMBLT1SFV10.0T1SFV1_CARPA; Myb-like transcription factor family protein
STRINGevm.model.supercontig_13.2460.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-57MYB_related family protein
Publications ? help Back to Top
  1. Huang CY, et al.
    Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5
    [PMID:23940319]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]