PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_13.181 | ||||||||
Common Name | PFL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | LFY | ||||||||
Protein Properties | Length: 336aa MW: 38003.9 Da PI: 7.0496 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 192.4 | 3.2e-59 | 1 | 152 | 1 | 156 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdm 81 mdp+ fs+slfkwdp ++++p rlle a +ap++aa + r+l +leelf++yG+ry+t+akiaelGft+stLvdm evm.model.supercontig_13.181 1 MDPDGFSSSLFKWDPTRGIVQAPVRLLEAVA--AAPTQAAYGVRPRELGGLEELFQDYGIRYFTAAKIAELGFTASTLVDM 79 9*************88888888888876655..4454678888899999******************************** PP FLO_LFY 82 kdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe 156 kdeeld++m+sls+ifr++llvGeryGikaavraerrrl++++ ++rr++ls+d+++aldalsqegl+ ++e evm.model.supercontig_13.181 80 KDEELDEMMNSLSQIFRWELLVGERYGIKAAVRAERRRLDDDD--SRRRQTLSTDTTHALDALSQEGLKVVGEEE 152 *****************************************77..888889****************76433222 PP | |||||||
2 | FLO_LFY | 397.4 | 1.7e-121 | 150 | 321 | 214 | 385 |
FLO_LFY 214 dedeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkaga 294 +e++e+++ +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfryakkaga evm.model.supercontig_13.181 150 EEEQEEENGGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGA 230 445555666789********************************************************************* PP FLO_LFY 295 syinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLr 375 syinkPkmrhYvhCYalhcLde++snalr afkergenvG+wrqacykplvaiaarqgwdida+fnahprL+iWYvP kLr evm.model.supercontig_13.181 231 SYINKPKMRHYVHCYALHCLDEKESNALRTAFKERGENVGSWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPNKLR 311 ********************************************************************************* PP FLO_LFY 376 qLChlerska 385 qLCh+er+++ evm.model.supercontig_13.181 312 QLCHAERNNT 321 *******987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.1E-62 | 1 | 155 | IPR002910 | Floricaula/leafy protein |
Pfam | PF01698 | 4.7E-118 | 151 | 321 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MDPDGFSSSL FKWDPTRGIV QAPVRLLEAV AAAPTQAAYG VRPRELGGLE ELFQDYGIRY 60 FTAAKIAELG FTASTLVDMK DEELDEMMNS LSQIFRWELL VGERYGIKAA VRAERRRLDD 120 DDSRRRQTLS TDTTHALDAL SQEGLKVVGE EEQEEENGGG SERQREHPFI VTEPGEVARG 180 KKNGLDYLFH LYEQCRDFLI QVQNIAKERG EKCPTKVTNQ VFRYAKKAGA SYINKPKMRH 240 YVHCYALHCL DEKESNALRT AFKERGENVG SWRQACYKPL VAIAARQGWD IDAIFNAHPR 300 LAIWYVPNKL RQLCHAERNN TAIASTSAAA HHLPF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 160 | 320 | 2 | 162 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 160 | 320 | 2 | 162 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_13.181 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ054794 | 0.0 | DQ054794.1 Carica papaya FLORICULA/LEAFY-like protein (PFL) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905597.1 | 0.0 | LOW QUALITY PROTEIN: floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | Q4TVN5 | 0.0 | Q4TVN5_CARPA; FLORICULA/LEAFY-like protein | ||||
STRING | evm.model.supercontig_13.181 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7907 | 28 | 41 | Representative plant | OGRP7018 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-103 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_13.181 |
Publications ? help Back to Top | |||
---|---|---|---|
|