PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_129.59
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 400aa    MW: 45421.4 Da    PI: 6.7912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_129.59genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd +l+d++++ G+g +W + ++++g++R++k+c++rw++yl
  evm.model.supercontig_129.59 14 KGPWSPEEDAQLKDYIEKNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP
2Myb_DNA-binding37.36.5e-1269111246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.supercontig_129.59  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                   569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.563966IPR017930Myb domain
SuperFamilySSF466895.19E-2611109IPR009057Homeodomain-like
SMARTSM007172.1E-121364IPR001005SANT/Myb domain
PfamPF002493.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231569IPR009057Homeodomain-like
CDDcd001672.79E-91662No hitNo description
PROSITE profilePS5129415.67467117IPR017930Myb domain
SMARTSM007174.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2370116IPR009057Homeodomain-like
CDDcd001674.29E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRAPCCDKS SVKKGPWSPE EDAQLKDYIE KNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKFLGK  120
QRKEQQARRC IKQEIMKRES HDLDHQNIYM VNPAANSGSM IITNQTLFWP NPAQLSLVHN  180
NINPLNPNPS PDQAASIKNL LIKLGGRFSD HHHDRNDDHQ QQQQHIQQPN SSIFTSADLQ  240
NMVAFNHHVN STSLIPEEPV IYESSAMNVA STSTCSLPNT QFNVVSSVAG DRDHYHHDQQ  300
HDHHQDMFQE LENFLSDTVM YSHVQEAAVS DNYMEMVNNG STGGTSTNST ESSSWEEFSS  360
LVYHHRPRMV SDHYETNCQQ KNALVQDPTF QDSTYFGPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_129.59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890462.10.0transcription factor RAX3-like
TrEMBLA0A067GTR91e-119A0A067GTR9_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_129.590.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.17e-86myb domain protein 68