PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1288.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 384aa    MW: 41171.9 Da    PI: 6.8709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1288.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-1971120255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f taeeAa+a+++a++ l+g
  evm.model.supercontig_1288.2  71 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEEAARAYDRAALILYG 120
                                   59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.77471128IPR001471AP2/ERF domain
CDDcd000181.09E-3171128No hitNo description
SuperFamilySSF541715.04E-2171128IPR016177DNA-binding domain
PfamPF008478.5E-1371118IPR001471AP2/ERF domain
SMARTSM003802.2E-3771134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2971128IPR001471AP2/ERF domain
PRINTSPR003671.2E-107283IPR001471AP2/ERF domain
PRINTSPR003671.2E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEPPLPPPEP NNTTDTKSSD TTTSDNTTNT TNTTKNEDTV AKNDTTNSGS SGSSSTRRCK  60
GKGGPDNSKF RYRGVRQRSW GKWVAEIREP RKRTRKWLGT FSTAEEAARA YDRAALILYG  120
SRAQLNLQPS GSTSSSSSSS RGGSASSSST TSSTQTLRPL LPRPSAFAFT FSSASSTSTL  180
LMSTQHALQT PVAAELAASS SGFMPFGAYQ NVVVGGSSAA LLCPSMVMTS TSTATTQLPV  240
FYQHYLQHHH HQYLPSDQIN VGDISTHYHH HGPTSATTSY NQNPTPHRHH HHHQPQQQEE  300
QEGCVFDVNS LVGSVDSSLS LSTQSAEAVI APPPLPPANP DPGFSVGHGS TPVWPLTGSA  360
EDDYPPCSIW DYPDPFGFLD LDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1872127359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1288.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893802.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A067FZN02e-72A0A067FZN0_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_1288.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.18e-34ERF family protein