PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_128.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 388aa MW: 41859.2 Da PI: 9.1549 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.4 | 1.7e-40 | 72 | 191 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss evm.model.supercontig_128.6 72 PAPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 153 589*******************************************************************999766666666 PP TCP 82 asnsssg..............................k 89 +s+ s++ + evm.model.supercontig_128.6 154 GSTISAShlrstyfhpnfaaqqlrirnewernfvldeQ 191 66433334444555444444445555555555555440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-40 | 77 | 256 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.582 | 79 | 133 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MDSENGIRRP NFPLQLLEKR EHHNHQQPPS SSSSSVYNTS SSLLGSTESN PNVNASRQAV 60 SNAQESAAAK KPAPKRTSTK DRHTKVEGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE 120 WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSTISAS HLRSTYFHPN FAAQQLRIRN 180 EWERNFVLDE QQRRSIMFPV ASDDNPLCNF PGSSSTNSNN NVSAFLRAKQ ELRDVTMEVS 240 HDGGDHSRKR RPLVEQENQM GNTYLIQSST GSIPASHSPI PATFWTVASP SSSQMMVGSD 300 NMWPFSSMSG STIPSGVHFM NFPTPIALLP GQQTTHNNSV GGDSHLGMLA ALNAYRPVPT 360 GTGNISGSDQ ASGSHHQHHG GGGEEGA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_128.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890638.1 | 0.0 | transcription factor TCP15 | ||||
TrEMBL | A0A061EAE7 | 1e-138 | A0A061EAE7_THECC; TCP family transcription factor, putative | ||||
STRING | evm.model.supercontig_128.6 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 | Representative plant | OGRP2699 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 5e-52 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_128.6 |