PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_128.41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Dof | ||||||||
Protein Properties | Length: 500aa MW: 53560.2 Da PI: 7.3397 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6.2e-40 | 149 | 209 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss evm.model.supercontig_128.41 149 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 209 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 146 | 206 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 151 | 207 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.947 | 153 | 207 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 155 | 191 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MFESKDTAIK LFGKTIPLPI LNHQIVSPNH SSSLTLDHAT AAVTADHTSP SAIFLPQDTT 60 GGSSTDGNGG DQNKKFQENS GEQVIEDKQE GNTSDHSAED LKEPATTSSG ISENPKTSSA 120 DRETSSLKSA NNGEQSDTSS SQEKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC 180 KNCQRYWTAG GTMRNVPVGA GRRKNKSSSA SHYRHIMVSE ALRAAQVSAS NAIHKASLGN 240 TGTILNFGST DSPLCESVAS VLKLSEKPQN CAQNGFHLSE QRILISSGAT ADTADDHSTM 300 NSSEKGHEAA AAKNYQAYPP QMPCFPGPPW PYPWNSSIPP PPAFCPSGFP VSFYPPPTYW 360 SCAVPPPWSV PFITSPPSSL NQSPQSSGPS SPTLGKHSRD GNILSTPSNT EKEQPSTDTE 420 KTVLVPKTLR IDDPREAAKS SIWATLGIKA ENKSSSNGGG LFKGFQSRAD DRNCMAEASP 480 VLQANPAALS RSLNFHESI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_128.41 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890593.1 | 0.0 | cyclic dof factor 1-like isoform X1 | ||||
TrEMBL | A0A2K1ZE60 | 0.0 | A0A2K1ZE60_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_128.41 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 8e-84 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_128.41 |