PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_128.40
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 325aa    MW: 35736.1 Da    PI: 6.7
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_128.40genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.9e-281061155
                       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                  kprl+WtpeLH+rFvea++qLG   +AtPk+++++m+++gLtl+h+kSHLQkYRl
  evm.model.supercontig_128.40 10 KPRLKWTPELHHRFVEAINQLG---EATPKSLMRVMGIPGLTLYHLKSHLQKYRL 61
                                  79*******************4...79***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-27861IPR009057Homeodomain-like
SuperFamilySSF466899.86E-15961IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-201062IPR006447Myb domain, plants
PfamPF002493.6E-91260IPR001005SANT/Myb domain
PfamPF143793.0E-23105152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNLVLSTDAK PRLKWTPELH HRFVEAINQL GEATPKSLMR VMGIPGLTLY HLKSHLQKYR  60
LGKGHQAETC IDNNQEDYGE VQSGSHGHFN TDMNNGNHNQ INENFQIAQA LQVQMEVQRK  120
LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ ETLAGYSSSS VGIELAKAEL SRLVSMVNTG  180
CPSSSFSELT EVGDSIMKDV NQKGTRGTIC SMESSLTSSE SSGGNDNGGP SKVNTCLELP  240
LMAIHPEKKP WSGDSSNQAV GRKRSCSTIS DGICVEQPLS KMLEIHQEKR NDQLGNSGFL  300
GTLDLNSQYH LNDSEQGPKA IDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-171063157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-171063157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-171063157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-171063157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_128.40
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890536.10.0myb family transcription factor PHL8-like isoform X2
SwissprotF4I2741e-86PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLW9SPH91e-150W9SPH9_9ROSA; Myb family transcription factor APL
STRINGevm.model.supercontig_128.400.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.15e-87G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]