PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_128.20

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

NAC

Protein Properties

Length: 397aa MW: 44397.9 Da PI: 6.9959

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_128.20	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.1	3e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 + pGfrFhPtdeelv +yLk+k+++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g evm.model.supercontig_128.20 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAG 93 579*************************.89***********8888999********************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl evm.model.supercontig_128.20 94 FWKATGTDRPIYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 *********956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-54	14	144	IPR003441	NAC domain
PROSITE profile	PS51005	52.167	14	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MEERNDGEKL EEIMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIRQLD IYKYDPWDLP 60 KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLTDSLLP HKKFIDKTIP ANDIQETNST AQRALSHSFV 180 SPLPETSTTS DHDISNKGSN NTQFSSDSIS ILTTSNSSIH FNHENFDHHI VQQPVSPLDH 240 FSTSYKPLIN PKMAATKPSP HHQLPMTGDL TSFIFSPLEL SSPPAKPTVD LSSMLLNMSS 300 ASMLGDYGTR SGSEGIDFGA SQNHQCDHGF SMSFPVHDLQ GNTNNVMNEG GPWPETITTR 360 SSMGFPPGLI SLPVSVNGDH HGLRSSFLWD PTFCPT*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MEERNDGEKL EEIMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIRQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLTDSLLP HKKFIDKTIP ANDIQETNST AQRALSHSFV  180
SPLPETSTTS DHDISNKGSN NTQFSSDSIS ILTTSNSSIH FNHENFDHHI VQQPVSPLDH  240
FSTSYKPLIN PKMAATKPSP HHQLPMTGDL TSFIFSPLEL SSPPAKPTVD LSSMLLNMSS  300
ASMLGDYGTR SGSEGIDFGA SQNHQCDHGF SMSFPVHDLQ GNTNNVMNEG GPWPETITTR  360
SSMGFPPGLI SLPVSVNGDH HGLRSSFLWD PTFCPT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	16	141	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	16	141	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	16	141	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	16	141	19	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	16	141	22	145	NAC domain-containing protein 19
3swm_B	2e-49	16	141	22	145	NAC domain-containing protein 19
3swm_C	2e-49	16	141	22	145	NAC domain-containing protein 19
3swm_D	2e-49	16	141	22	145	NAC domain-containing protein 19
3swp_A	2e-49	16	141	22	145	NAC domain-containing protein 19
3swp_B	2e-49	16	141	22	145	NAC domain-containing protein 19
3swp_C	2e-49	16	141	22	145	NAC domain-containing protein 19
3swp_D	2e-49	16	141	22	145	NAC domain-containing protein 19
4dul_A	2e-49	16	141	19	142	NAC domain-containing protein 19
4dul_B	2e-49	16	141	19	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_128.20

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890547.1	0.0	LOW QUALITY PROTEIN: protein FEZ
Swissprot	Q9ZVH0	1e-103	FEZ_ARATH; Protein FEZ
TrEMBL	F6HPC3	1e-144	F6HPC3_VITVI; Uncharacterized protein
STRING	evm.model.supercontig_128.20	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_128.20

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]