PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_127.55
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 479aa    MW: 51914.8 Da    PI: 7.2879
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_127.55genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-32259314156
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                   k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  evm.model.supercontig_127.55 259 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 314
                                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-17256317IPR009057Homeodomain-like
PROSITE profilePS5129412.543256316IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-28257317IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-26259314IPR006447Myb domain, plants
PfamPF002498.5E-7261312IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFGDQTTAD HAQKLEEFLS RLEEERLKID AFKRELPLCM  60
QLLTNAVEAS RQQLQAYRAN QGPRPVLEEF IPLKNPSSES TEKLNTISDK ANWMTSAQLW  120
SQAGNETKPQ PTTIISSSLS PKETDIGFNV SPKLALDTKQ RNGGAFLPFS KERNSCPTPT  180
PVRAGLPELA LVSREKDGMD QDSKFSDQMG ESGMVRREST GKAGNGINEQ GKGPCNNNST  240
SEAQAGNNTA TNAAQTHRKA RRCWSPDLHR RFVNALQMLG GSQVATPKQI RELMKVEGLT  300
NDEVKSHLQK YRLHTRRPSP SPQATGAPAP QLVVLGGIWV PPEYATAHGG TPTLYGTHHH  360
PAAPHAPTHF CAPPPVPQEF YSSTSPAAAP PPALHHPTLH HQLLMYKAAS AQTHSSPESD  420
IRGAADRSES IEDGKSESSS WKGDSGGENG NSGDQRKGLA ALREDGEESN GSEITLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-14259312154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14259312154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14259312154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14259312154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_127.55
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890641.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-137EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A0B0MUB90.0A0A0B0MUB9_GOSAR; Two-component response regulator ARR18-like protein
STRINGevm.model.supercontig_127.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Representative plantOGRP43031624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-124G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]