PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_127.10
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 250aa    MW: 28562.6 Da    PI: 6.9586
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_127.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.7e-25199248151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQ
  evm.model.supercontig_127.10 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVDKLTRENVASHLQ 248
                                   79*******************.***************************** PP
2Response_reg78.42.4e-26201281109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   vl vdD+p+ + ll+++l++ +y +v+ ++++ +al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++a
  evm.model.supercontig_127.10  20 VLAVDDNPTCLLLLETLLRRCQY-HVTKTTQAIKALKMLRENKdkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSA 98 
                                   799********************.***************888888*******************87754.558******** PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                   +g+ +++ + +  Ga d+l Kp+ +eel +
  evm.model.supercontig_127.10  99 YGDTKLVMKGITHGACDYLLKPVRIEELKN 128
                                   ***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.2E-1461249IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.1E-4217152No hitNo description
SuperFamilySSF521722.13E-3617147IPR011006CheY-like superfamily
SMARTSM004485.5E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.46119134IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-2420128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.66E-2221133No hitNo description
PROSITE profilePS5129412.946196249IPR017930Myb domain
SuperFamilySSF466893.4E-16196248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-25197248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-22199248IPR006447Myb domain, plants
PfamPF002491.5E-5201248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MTVEREIGEQ RDQFPVGMRV LAVDDNPTCL LLLETLLRRC QYHVTKTTQA IKALKMLREN  60
KDKFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAYG DTKLVMKGIT HGACDYLLKP  120
VRIEELKNIW QHVVRRKTES KDRNNSNHQD RSRSGNGEAA SRISDQHGKL NKKRKDQNED  180
EDEERDDGHD NEDPSTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVDKLTR  240
ENVASHLQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23195248154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_127.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4585945e-32AM458594.2 Vitis vinifera contig VV78X201737.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890650.10.0two-component response regulator ARR12-like isoform X1
SwissprotQ5SML51e-116ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A1Q3AWN01e-135A0A1Q3AWN0_CEPFO; Response_reg domain-containing protein/Myb_DNA-binding domain-containing protein (Fragment)
STRINGevm.model.supercontig_127.100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-97response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]