PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_126.49 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 180aa MW: 20772.2 Da PI: 6.2813 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.6 | 2e-31 | 118 | 176 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++edp+++++tYeg Hnh+ evm.model.supercontig_126.49 118 LDDGFKWRKYGKKMVKNSPNPRNYYKCSIEGCPVKKRVERDKEDPSYIITTYEGFHNHR 176 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.3E-33 | 104 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-28 | 111 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 113 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-35 | 118 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-25 | 119 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MSSSTDRQES PEANFEAPNL FSFFYEDEWV RVEDDDLSSL VFGSNTQNSL HIPTQPVQFP 60 QINTTITTIV TQPSRSATTA TTIVKQPQFP IIGEIEREDK KEVKERYAFK TKSEVEILDD 120 GFKWRKYGKK MVKNSPNPRN YYKCSIEGCP VKKRVERDKE DPSYIITTYE GFHNHRTTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 108 | 175 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 108 | 175 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_126.49 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890732.1 | 1e-132 | probable WRKY transcription factor 50 | ||||
Swissprot | Q8VWQ5 | 3e-43 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | S5CS47 | 1e-47 | S5CS47_JATCU; WRKY transcription factor 14 | ||||
STRING | evm.model.supercontig_126.49 | 1e-131 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6121 | 27 | 47 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 6e-45 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_126.49 |
Publications ? help Back to Top | |||
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