PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_126.33
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 186aa    MW: 21360.3 Da    PI: 9.3958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_126.33genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+ Ed++l d++k +G g W  I+   g++R++k+c++rw++yl
  evm.model.supercontig_126.33 14 KGAWTAMEDQILTDYIKIHGEGKWGNIPIQTGLKRCGKSCRLRWLNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding54.23.2e-1767111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  evm.model.supercontig_126.33  67 RGNISEEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                                   7899******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.145961IPR017930Myb domain
SuperFamilySSF466892.37E-2911108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002499.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001672.25E-91661No hitNo description
PROSITE profilePS5129426.43362116IPR017930Myb domain
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2569116IPR009057Homeodomain-like
CDDcd001679.97E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRKALCSKN GMKKGAWTAM EDQILTDYIK IHGEGKWGNI PIQTGLKRCG KSCRLRWLNY  60
LKPDIKRGNI SEEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKIKSNE  120
QSKDKELQIN QRKDLSLDSC TTVSNTPKPS YENSYLEFDS GDQFLFSDIS DFEFWKISQF  180
FSGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_126.33
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890730.11e-135transcription factor MYB114-like
SwissprotP102901e-60MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A061GJG14e-71A0A061GJG1_THECC; Transcription factor MYB558, putative
STRINGevm.model.supercontig_126.331e-134(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-59myb domain protein 3
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]