PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_125.6
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YA
Protein Properties Length: 318aa    MW: 34566.5 Da    PI: 8.4807
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_125.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32156212158
                    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                  +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  evm.model.supercontig_125.6 156 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHLHAMRRARGCGGRF 212
                                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-37154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.39155215IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.0E-28157212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.3E-24158180IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860160180IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.3E-24189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPAKNENGDR RLDHGGQDML HSSLYSQPWW HGVGTNASLG EPAPKTSSME HLNDCYANEA  60
TRPQPNGCMA DGGSNNGRED RHLKHIPSTT ALPMGEHLES NSQMELVGHS IVLTSYPYLD  120
PQYGGILASY GPQAMVPPPL YGMHHARMPL PLEMEEEPVY VNAKQYHGIL RRRQSRAKAE  180
LEKKVIKVRK PYLHESRHLH AMRRARGCGG RFLNTKKLDG DAENGASEKC MNSVGNLSTK  240
HGSECLPANG TGNLVSSSNQ KGNGAMVNDL HKLNHSSSVN SNSHGLSSAY HAGGRDFLDR  300
ERGSTFSNGA PQGAPPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20156219265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_125.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890762.10.0nuclear transcription factor Y subunit A-4-like isoform X2
RefseqXP_021890763.10.0nuclear transcription factor Y subunit A-4-like isoform X2
RefseqXP_021890764.10.0nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A061E3681e-128A0A061E368_THECC; Nuclear transcription factor Y subunit A-1, putative isoform 2
STRINGevm.model.supercontig_125.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.47e-41nuclear factor Y, subunit A1