PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_120.45
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 553aa    MW: 64015.4 Da    PI: 4.7257
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_120.45genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS108.77.9e-341705527374
                          GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                   ++Aea+++++ ela+ +  r++e  sp gd  +R+  y  ++ +++  +           +++s    +   aal++f+++
  evm.model.supercontig_120.45 170 AFAEAMEKEQGELAEVIRRRINEKLSPVGDIEERVMYYWFQGVEEKQID---------YIKQES---NKIFGAALETFYQI 238
                                   579****************************************999888.........344444...456778999***** PP

                          GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg...ppslRiTgvgspesgskeeleetger 164
                                   +P+  f+hl+aN+aI+e++    e +HiiDfd++qG+QW +L+ +La + ++     +lRiT ++  e ++k +  et++r
  evm.model.supercontig_120.45 239 FPYGMFAHLAANSAIVESMPCGaEVLHIIDFDVGQGVQWCSLMATLAHQHQQklkMITLRITSIKW-EDEEKWRFVETKRR 318
                                   *******************8552778*********************88844222459*******9.5579999******* PP

                          GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksls......P 236
                                   L ++A e+gv++  +     +l+++ +++L+ +    +E l  n++  + ++ +++   +   +e+++  k++        
  evm.model.supercontig_120.45 319 LCDYAMEIGVKLIVED--QVELQEMVINRLKNRGyckREWLGFNCMWGIPHMGRRRRRRD--VREFISGAKEILgwgislG 395
                                   ***********99887..4578888888887776777***************95554444..4788888877652222224 PP

                          GRAS 237 kvvvvveqeadhnse..........sFlerflealeyysalfdsleaklpres....eerikvErellgreiv..nvvace 301
                                    ++ + + e++ ns+          sF +r     ++y al++s+e ++ +++    e+r+ +E  + ++ ++  +++   
  evm.model.supercontig_120.45 396 GIISFGDGESSVNSQnqlmgnngfgSFYNR---YRDHYKALLESMEWSFFPNHlhlsEARVAMESLFAAPFLSphSWIKLW 473
                                   789999999999888777777644444444...4479********988777766787999999999888876433788887 PP

                          GRAS 302 gaerrerhetle.kWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                                   +++++ +++ ++ + ++   ++G++  +++e+   +ak ++   +  +  y+v     + +++vl  k+ pL++vS W+
  evm.model.supercontig_120.45 474 EEMKQDQKQGAGfSFNNFEASFGLQGRRVREESLIEAKEMVGDDHqgKTPYKVRiqgLNAHQMVLESKGTPLITVSTWQ 552
                                   7777766666661455555569****************99987664444499985444589999**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.42138527IPR005202Transcription factor GRAS
PfamPF035142.7E-31170552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MVEATANPFD QLSIIFPSSD STDSLLNYVV DEYNMNHSHK IFSPIDISLL VPHSPAAVLS  60
DEFIDYPSGH LLHQSVDYDL EEMEPFKSTQ MENITRWLDE EDDEEESLIS FVNHHRQDLF  120
YLDQDVSECK FDELMHSDEA SMEFDEQFLI LPTKEMEIDK QLSVKHLEGA FAEAMEKEQG  180
ELAEVIRRRI NEKLSPVGDI EERVMYYWFQ GVEEKQIDYI KQESNKIFGA ALETFYQIFP  240
YGMFAHLAAN SAIVESMPCG AEVLHIIDFD VGQGVQWCSL MATLAHQHQQ KLKMITLRIT  300
SIKWEDEEKW RFVETKRRLC DYAMEIGVKL IVEDQVELQE MVINRLKNRG YCKREWLGFN  360
CMWGIPHMGR RRRRRDVREF ISGAKEILGW GISLGGIISF GDGESSVNSQ NQLMGNNGFG  420
SFYNRYRDHY KALLESMEWS FFPNHLHLSE ARVAMESLFA APFLSPHSWI KLWEEMKQDQ  480
KQGAGFSFNN FEASFGLQGR RVREESLIEA KEMVGDDHQG KTPYKVRIQG LNAHQMVLES  540
KGTPLITVST WQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369377RRRRRRDVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_120.45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891043.10.0nodulation-signaling pathway 2 protein-like
STRINGevm.model.supercontig_120.450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-15GRAS family protein