PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_12.58 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 748aa MW: 80553.7 Da PI: 6.4427 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.2e-32 | 322 | 379 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k evm.model.supercontig_12.58 322 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 379 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.7 | 1e-32 | 538 | 596 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ evm.model.supercontig_12.58 538 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 596 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.606 | 316 | 380 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-28 | 319 | 380 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-25 | 319 | 380 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-36 | 321 | 379 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-25 | 322 | 378 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-37 | 523 | 598 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 530 | 598 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 533 | 598 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 538 | 597 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-25 | 539 | 596 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MAGIEDNIAI IGDWVPPSPS PRTFFTAMLG EDMSSKFMSE ALPDNKTEGL FLGSREQMRS 60 GETHKKSLRE MGDQSAELGL ISEQKSSSRG GLGERIAARA GFNAPKLNTE NIRSADLSSN 120 PDVRSPYLTI PAGLSPTTLL DSPVFLSNSL AQPSPTTGKF SFLPNGNDRS STLTSEVLDK 180 NKDNFFEDIG ASSFAFKPIV ESNPSFFLGA TNRIVRNPAT LPQQSFPSIE VSVQSENSLQ 240 SQNAEAAKVH SQNRNILPFQ ADFARLSAEK DHGSNTGAAN HRVPDAVGGA AELSPPLDDQ 300 QDDDQRGSGD SLAGGGGSAP SDDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCQVKKKVER 360 SHEGHITEII YKGAHNHPKP PPNRRSAIGS SNPVLDMQID GPEQPGQQNG IDGDSIWANT 420 QKGTASGTPD WRHDNVEVTS SATLGPEYGN QSAALHAQNG AQLESGDAID ASSTFSNDED 480 EEDRATHGSV SLGYEGEGDE SESKRRKIEA YATEISGATR AIREPRVVVQ TTSEVDILDD 540 GYRWRKYGQK VVKGNPNPRS YYKCTSAGCT VRKHVERASH DLKSVITTYE GKHNHDVPAA 600 RNSSHVNSGN SSSIAGQAAS AIQSHIHRPE SSQVHNSMAR FERPAAFGSF TLPGRQQLGH 660 SPGFSFGMNQ AGFTNLAMAG LGPGQAKLPV LPVHPYLAQQ RQVNEMGFML PKGEPKVEPM 720 SEPGLNLSNS SSAYQQIISR LPLGPQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-34 | 322 | 599 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-34 | 322 | 599 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_12.58 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905874.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A061FBG5 | 0.0 | A0A061FBG5_THECC; WRKY DNA-binding protein 2 isoform 3 | ||||
STRING | evm.model.supercontig_12.58 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7954 | 27 | 40 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_12.58 |
Publications ? help Back to Top | |||
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