PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.48
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 438aa    MW: 49461.4 Da    PI: 6.7127
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.26.9e-121424371374
                         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn........ 73 
                                  +++lL++cAe +s +d+ +aq+lL+ ls ++sp+gd+++Rl++ f++AL+ r+++ ++s+ +  +   + ++          
  evm.model.supercontig_12.48  42 MRQLLITCAELLSRSDFPAAQRLLSFLSANSSPYGDSTERLVHQFARALSMRITShHGSGSVLMMLNLNLNDAAlptpvins 123
                                  589***************************************************9544443333322222222255565555 PP

                         GRAS  74 .......sseelaalklfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslR 143
                                         ss++ + +  +++++P+++fshltaNqaIlea+e g++++Hi+D+di+qG+QWp+L+qaLa+R+    ++pp+lR
  evm.model.supercontig_12.48 124 sleedrySSTSQSCYLSLNQITPFIRFSHLTANQAILEAIEvGQQAIHILDLDIMQGVQWPPLMQALAERShnslNPPPMLR 205
                                  55433333333333344***********************95569**************************999899***** PP

                         GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledl....eleeLrvkpgEalaVnlvlqlhrlldesvs 219
                                  iT+ g+    + ++l++tgerL +fA++lg++f+f++l  + ++ ++l     +++L++ p+E+laVn+vl lhrl +++ s
  evm.model.supercontig_12.48 206 ITATGH----DLNMLNTTGERLFRFAQSLGIRFSFHPLlvLNDDPASLalflIPSALAILPDESLAVNCVLYLHRLIKDDDS 283
                                  ******....9**************************965222222222223688999999****************77777 PP

                         GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                       + +L+ +k l+P+vv+v+e+e +hn++ Fl+rf++al++y+a+f slea+lp++s+er  vE+ ++greiv++v+++
  evm.model.supercontig_12.48 284 RGL--RLLLQKIKALNPTVVTVAEREGNHNHPLFLQRFVDALDHYTAIFQSLEATLPPNSRERLGVEQIWFGREIVDIVTAQ 363
                                  766..99*************************************************************************** PP

                         GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  +++rrerhe++e W+++++ aGF++v+ls +a +qaklllr ++ s+gy+++  ++s++lgW++r+L++vS+Wr
  evm.model.supercontig_12.48 364 QENRRERHERFEWWEMMMRGAGFSNVALSPFALSQAKLLLRLHYpSEGYKLQILNNSFFLGWHNRRLFFVSSWR 437
                                  *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.06116416IPR005202Transcription factor GRAS
PfamPF035142.4E-11842437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLGGSLISSS FNDQDQDQDD PSTSDHHHHN ITIPHPASAI HMRQLLITCA ELLSRSDFPA  60
AQRLLSFLSA NSSPYGDSTE RLVHQFARAL SMRITSHHGS GSVLMMLNLN LNDAALPTPV  120
INSSLEEDRY SSTSQSCYLS LNQITPFIRF SHLTANQAIL EAIEVGQQAI HILDLDIMQG  180
VQWPPLMQAL AERSHNSLNP PPMLRITATG HDLNMLNTTG ERLFRFAQSL GIRFSFHPLL  240
VLNDDPASLA LFLIPSALAI LPDESLAVNC VLYLHRLIKD DDSRGLRLLL QKIKALNPTV  300
VTVAEREGNH NHPLFLQRFV DALDHYTAIF QSLEATLPPN SRERLGVEQI WFGREIVDIV  360
TAQQENRRER HERFEWWEMM MRGAGFSNVA LSPFALSQAK LLLRLHYPSE GYKLQILNNS  420
FFLGWHNRRL FFVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-584943626378Protein SCARECROW
5b3h_A5e-584943625377Protein SCARECROW
5b3h_D5e-584943625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.48
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905966.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-138SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1Q3BNV00.0A0A1Q3BNV0_CEPFO; GRAS domain-containing protein
STRINGevm.model.supercontig_12.480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-128GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]