PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_12.292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 582aa MW: 63294 Da PI: 8.0546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l++ v+ +G g+W+++ + g+ R++k+c++rw ++l evm.model.supercontig_12.292 37 KGPWTAAEDAILAEHVRTHGEGNWNSVQKITGLARCGKSCRLRWANHL 84 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++ evm.model.supercontig_12.292 90 KGAFTPEEERLIAELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 133 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.221 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 36 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-12 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.11E-10 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 25.053 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-16 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 92 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-11 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MIPYGIGETN ASGSSRSSGE IGGGGAEGGV GKVILKKGPW TAAEDAILAE HVRTHGEGNW 60 NSVQKITGLA RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IAELHAKLGN KWARMAAQLP 120 GRTDNEIKNY WNTRVKRRQR QRLPLYPPDI EPTYQQEGQQ QPFYHCHQQQ QPQQQPHSQP 180 MTPISPLSSS APTTPSSSSF TFQTHLLPHS PTPTTPNPPS PLTPPPVSPA LSSPHNFPTL 240 SLFGNGTNSP LSTATTPTSN AIISPFFFPR APPLLQTPLR LRRLQHETAT NTTTTPPLTP 300 NNNTTNTGCN GFMLPFSSLI NESSFTSLVT RHSSCPTTPT DAISPQLPLL GSPTVPSYSL 360 SNSPLTFGPG SPQMLRGGQQ HMVPTTDSIF PMKTELPSSQ LLSQNSFSEW ALDAKLKKNS 420 RKKKMMLGIR PCSTGLLEDL LSESQNFGGE SSHENMKRRH ILELEEDKPG LGGFGSWSDT 480 TSISLSSDIG FKQKEEVPTQ INTLHEDLTK LINGVPSMRV PDQWYNDTGD QISNGQQSSV 540 VTDDNLGIDL QQIASLFPVD PATEPGRNTG SCSWDNLPGI C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-30 | 35 | 138 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_12.292 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906038.1 | 0.0 | transcription factor MYB120-like | ||||
STRING | evm.model.supercontig_12.292 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55020.1 | 1e-64 | myb domain protein 120 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_12.292 |