PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.22
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 365aa    MW: 40344.9 Da    PI: 7.4098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171865148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT+eEd++lvd++++ G g W++ ++  g++R++k+c++rw +yl
  evm.model.supercontig_12.22 18 KGPWTAEEDQKLVDYIQKNGHGKWRLLPKNAGLKRCGKSCRLRWTNYL 65
                                 79********************************************97 PP
2Myb_DNA-binding50.74.3e-1671115147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  rg+++ eE+e + +++  lG++ W++Ia++++ gRt++++k++w+++
  evm.model.supercontig_12.22  71 RGKFSLEEEETITHLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 115
                                  89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7841365IPR017930Myb domain
SMARTSM007171.3E-141767IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-3017112IPR009057Homeodomain-like
PfamPF002499.4E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231972IPR009057Homeodomain-like
CDDcd001677.43E-122065No hitNo description
PROSITE profilePS5129424.96766120IPR017930Myb domain
SMARTSM007177.3E-1570118IPR001005SANT/Myb domain
PfamPF002491.5E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2673120IPR009057Homeodomain-like
CDDcd001677.42E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGKPQSGDKS GNNGVLKKGP WTAEEDQKLV DYIQKNGHGK WRLLPKNAGL KRCGKSCRLR  60
WTNYLRPDIK RGKFSLEEEE TITHLHSVLG NKWSAIAARL PGRTDNEIKN YWNTHIKKKL  120
LRMGIDPVTH APRLDLLDLS SILTSSLLNS TQFHPSLLGI ASLDPAILSL ATTFLSTQRL  180
QGLQDQNHLC NNTTTTHIQN HYGFFFHENQ LQTQNSIQPC TASSDHDSST TQLFLDENQI  240
INNHHQPSLN QFSTRQVTDL TCQNSLSWQG NNGEIPSNYI HDPVTSYGGN SYHENYNSKL  300
PGSCGNLSFA SLLSSTPSSS STPLHSSCTA AYVNGGSEDD KDSYCSNLLM FDIPSTGLNV  360
DGCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31161205108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.22
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906066.10.0transcription factor MYB41-like
SwissprotQ9LDR85e-92MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2N9EYM11e-110A0A2N9EYM1_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_12.220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-80MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]