PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_12.196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 423aa MW: 45705.8 Da PI: 8.1039 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.8 | 1.1e-33 | 238 | 296 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ evm.model.supercontig_12.196 238 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 296 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-38 | 223 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-29 | 230 | 298 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 233 | 298 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 238 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-26 | 239 | 296 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDDHVSAPQQ LQLRMSDTGD PAQKPAGFDG TGAGGARYKL MSPAKLPISR SSCITIPPGL 60 SPTSFLESPV LLSNVKAEPS PTTGSLTKPQ MPHASVGSSS YLATSFEERK SSSFEFRPPP 120 KSNMPQPSRR YSAGMIMSNQ KERSDKASSL AGRDDKSSMY GQVSHTGEPN GTPDLSPGAA 180 NDENGEGAVL NRINDEFDED DPFSKRRKMD GGIEVTPVVK PIREPRVVVQ TLSEVDILDD 240 GYRWRKYGQK VVRGNPNPRS YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPTA 300 RTSSHDTSGV ALNGASRLRP EENDAISLDL GVGISSGNDN RLSEQQQVHA ELIQGQTRAN 360 TAASFRLVPA VPLASYYGVV NSGLNSHMSR EPQTEVRSVE LQPLNHSSYP YPPNMGRILS 420 GP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-38 | 229 | 298 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-38 | 229 | 298 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_12.196 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906008.1 | 0.0 | probable WRKY transcription factor 20 | ||||
Swissprot | Q93WV0 | 1e-116 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A251PPU1 | 1e-145 | A0A251PPU1_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251PT15 | 1e-145 | A0A251PT15_PRUPE; Uncharacterized protein | ||||
STRING | evm.model.supercontig_12.196 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3133 | 28 | 67 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-119 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_12.196 |