PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_118.25
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 421aa    MW: 45751.6 Da    PI: 7.6301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_118.25genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-11166190226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   +++ C ++++t tCk+Gd+CkF H+
  evm.model.supercontig_118.25 166 GEKDCAHYMQTRTCKFGDSCKFDHP 190
                                   7889********************8 PP
2zf-CCCH27.94.1e-09216242127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++ C++f++t  Ck+G +C+F+H++
  evm.model.supercontig_118.25 216 PGQPDCPYFMKTQRCKFGFKCRFNHPR 242
                                   5789*********************96 PP
3zf-CCCH35.71.5e-11262287227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   +++ C f+++tG+Ck+G++CkF+H++
  evm.model.supercontig_118.25 262 FEPQCAFYMKTGQCKFGPTCKFHHPK 287
                                   6789********************96 PP
4zf-CCCH38.81.5e-12333358126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+f+++tG CkyG++C+++H+
  evm.model.supercontig_118.25 333 PGEVDCPFYLKTGSCKYGATCRYNHP 358
                                   57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013164191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6165191IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9166190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4170189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737215243IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4215242IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6217242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5220246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4221243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38260288IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018260287IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9262287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5265288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4266286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432332360IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7332359IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10334358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4338357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MANQLYGYES ATTKSAAAAA AKAKSTLSSL FGTTRSRSET YLSDTTLRYL SAGSDSLVSD  60
LTSKYSSIGT SSTMYHHLAQ TASLLASSQQ HQATWPPGVD VPPAPGVEPL LPPGVKRSSD  120
VLYHPTLLGA HDTIGQSEAW YTTTSFAKRY RLESTSHLPI YPQRPGEKDC AHYMQTRTCK  180
FGDSCKFDHP IWVPEGGIPD WKEVPLPSGS ELPERPGQPD CPYFMKTQRC KFGFKCRFNH  240
PRDKLETVGA TENPGALPER PFEPQCAFYM KTGQCKFGPT CKFHHPKDIQ ILAAGQENGN  300
GEQTGSAFKS EGANAVTFSP ALYQNTKGLP IRPGEVDCPF YLKTGSCKYG ATCRYNHPDR  360
NAFIPPAAIG AMVASSATNL NIGVVSPATS IYQTIDPRLA QPMEQILVDL SCWVLLEGDC  420
*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_118.25
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240339e-72AB024033.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21.
GenBankCP0026869e-72CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891180.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-165C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2U9NK180.0A0A2U9NK18_CARPA; HUA1
STRINGevm.model.supercontig_118.250.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-154floral homeotic protein (HUA1)