PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1175.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 229aa MW: 25354.8 Da PI: 4.0998

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1175.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00064	177	216	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r R d+i+s + L +++P a ++K +L +A++Y+k L evm.model.supercontig_1175.1 177 RLRNDKIRSTLRILESIIPRA----KGKDP-LVVLDEAIDYLKLL 216 7899**************9....45555.89*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.943	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-5	177	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
FLCPARCPNA AVTELMCGPI LHEGETIKVD QFTPKEAIFH EESDENDLYG EDSEMHEDTE 60 EINALLYSDD DEDCGKEYGN DNDDDEVMST GHSPVTIKGA YNEQEQLEEI TEEVASSDGP 120 HKRQKLLDGG YGELLLVGTA NSVKSKESHE DDDDVEPSYD IGQAQTEEVG SIPGNKRLRN 180 DKIRSTLRIL ESIIPRAKGK DPLVVLDEAI DYLKLLKHKG SALGVNWY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1175.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895105.1	1e-165	transcription factor bHLH143-like
Refseq	XP_021895110.1	1e-165	transcription factor bHLH143-like
Swissprot	Q9FY69	1e-28	BH143_ARATH; Transcription factor bHLH143
TrEMBL	V4S5G3	3e-64	V4S5G3_9ROSI; Uncharacterized protein
STRING	evm.model.supercontig_1175.1	1e-167	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14
Representative plant	OGRP5768	3	4

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1175.1

Publications ? help Back to Top
Imai A, et al. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Development, 2006. 133(18): p. 3575-85 [PMID:16936072] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]