PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1156.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 497aa    MW: 56491.4 Da    PI: 10.3342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1156.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.9e-06338359627
                                   -SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                   C+ f +tG C+ G++Ck +H++
  evm.model.supercontig_1156.4 338 CPAFEATGSCPQGSKCKLHHPK 359
                                   *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.394228257IPR000571Zinc finger, CCCH-type
SMARTSM003560.006230256IPR000571Zinc finger, CCCH-type
SMARTSM003565.3257281IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.756261282IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032283308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.995283309IPR000571Zinc finger, CCCH-type
SMARTSM003560.01310336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258310337IPR000571Zinc finger, CCCH-type
SMARTSM003560.49337359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.197338360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MKRSKFSLVW TLHGADISKS YGNSLKRQKV LPHLFPWKRA TYWRSFTPYS AFVSRNNSLS  60
TISKKLLLLR KRDTVYTRST HGFSLRKSKV LSVGGSNLKW SRSIERDSKK ANEEATLAIA  120
AVEKKKRERH GTRSAVSGTK KRSHSSRERI FRIGSIRYRM DSSKRTLQRI PDESSSCSAG  180
FLLEDEAKKP YVRIGNGNQL IRDPKKRARV LASEKIRWSL HTARLRLAKK RKYCQFFTRF  240
GECNKDDGKC PYIHDPSKIA VCTKFLNGLC SNSNCKLTHK VIPERMPDCS YFLQGLCTNT  300
NCPYRHVHVN PNAPACEAFL RGYCADGNEC RKKHSYVCPA FEATGSCPQG SKCKLHHPKN  360
RSKGRKRKRS CAQKNARGRY FGSLHVEITE PGSVVLERHS MQEENAIFGG KLTDYIGLDD  420
TDGEVSDGEA GESNDLGNEK TTFGEGDLSD FQFDDLDELI KPVRIMTPSD WPDKRVKHAF  480
SYSMAEFIFL LHFSKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C4e-1423435942169Cleavage and polyadenylation specificity factor subunit 4
6fbs_C2e-1423435941168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C2e-1423435941168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143KKRSH
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1156.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895294.10.0uncharacterized protein LOC110812756 isoform X1
SwissprotQ3ED780.0C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A2C9U1B30.0A0A2C9U1B3_MANES; Uncharacterized protein
STRINGevm.model.supercontig_1156.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012
Representative plantOGRP457355
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]