PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1141.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | SBP | ||||||||
Protein Properties | Length: 207aa MW: 23268.5 Da PI: 9.1366 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.1 | 4.5e-42 | 93 | 169 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dl+++++yhrrhkvCe hsk+p+vl++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ evm.model.supercontig_1141.2 93 CLVDGCNSDLNNCRDYHRRHKVCELHSKTPQVLINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-34 | 86 | 154 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.077 | 90 | 167 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.07E-39 | 91 | 172 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-31 | 93 | 166 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDWNLKATSW DLSDFEQEPV TNIDIGIDGS SSLGGPRSRG NFSVDLKLGQ VGNSTDESLN 60 KWKDPGVTKM ESSPSGSSKR ARATNNGTHT VSCLVDGCNS DLNNCRDYHR RHKVCELHSK 120 TPQVLINGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD PLSRNAGFLS 180 NYQGTQFVPF SSSHVYPSTN VVNPHLX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 93 | 166 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 166 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1141.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895438.1 | 1e-149 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 1e-74 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 1e-74 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A061G652 | 1e-113 | A0A061G652_THECC; Squamosa promoter-binding protein isoform 1 | ||||
STRING | evm.model.supercontig_1141.2 | 1e-152 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4111 | 27 | 59 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-72 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1141.2 |
Publications ? help Back to Top | |||
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