PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1130.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 308aa    MW: 34331.4 Da    PI: 9.7859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1130.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-092974346
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                  rWT+eE +++ +a + + ++   +W ++a++++ g+t  +++  ++ 
  evm.model.supercontig_1130.1 29 RWTPEENKRFENALAFYDKDtpdRWVKVAAMIP-GKTVGDVIKQYRE 74
                                  8********************************.******9999986 PP
2Myb_DNA-binding46.11.1e-14137181347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  evm.model.supercontig_1130.1 137 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 181
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-42375IPR009057Homeodomain-like
PROSITE profilePS512938.432580IPR017884SANT domain
SMARTSM007176.0E-102678IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-112982IPR009057Homeodomain-like
CDDcd001677.72E-82975No hitNo description
PfamPF002492.8E-72974IPR001005SANT/Myb domain
PROSITE profilePS5129420.244130186IPR017930Myb domain
SuperFamilySSF466892.15E-17132185IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-18133185IPR006447Myb domain, plants
SMARTSM007173.5E-13134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12134181IPR009057Homeodomain-like
CDDcd001672.75E-11137182No hitNo description
PfamPF002494.1E-12137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMNRGIEILS PASYLQNSNW LFQESKGARW TPEENKRFEN ALAFYDKDTP DRWVKVAAMI  60
PGKTVGDVIK QYRELEEDVS DIEAGLIPIP GYTTDSFKLE LVSSNHGFDG LGQFYSPGGR  120
RATGIRPSDQ ERKKGVPWTE EEHRQFLLGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK  180
YFIRQLTGGK DKRRSSIHDI TTVNVPDSKS VSPDNNSPSS PNHSTASIQQ QQPKVGGMGK  240
GLFDWKPQNG GAAAAAFNPA NGNAFMAPFY SISSYGLKVQ EQNLLRGTLH ESQFGPYGFH  300
MQSMQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-162794875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895666.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-114DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2I4KKD51e-176A0A2I4KKD5_POPTR; MYB family protein
STRINGevm.model.supercontig_1130.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-122MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]