PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_113.36
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 291aa    MW: 33717.9 Da    PI: 4.8139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_113.36genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.41.8e-29311635128
                           NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratks 80 
                                   + F Ptde lv ++L++k+ gkk++l ++ i e+d+y ++P  Lp + + + ++ + y+F++r+k +a  +gkr++r+++ 
  evm.model.supercontig_113.36  31 LTFAPTDELLVAYFLRNKILGKKTNLINMfIVEADVYASHPDGLPwEyHPQVTDGHRYYFVRRRKVSAncKGKRPSRTIDC 111
                                   47*********************8887777***************533333455588*****99988844699******** PP

                           NAM  81 gyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                                   g W++   dke+ + +g++vg kktL f+      +++++++k+ W+mheyrl
  evm.model.supercontig_113.36 112 GWWRSDTGDKEIAR-RGAVVGFKKTLSFFlykdqAKKRNEAQKSGWIMHEYRL 163
                                   *************9.999**********98887656888899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-3425180IPR003441NAC domain
PROSITE profilePS5100535.53127180IPR003441NAC domain
PfamPF023651.9E-1732163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENRWKSDDF DFDFDLEEDE QSTSGFPVGV LTFAPTDELL VAYFLRNKIL GKKTNLINMF  60
IVEADVYASH PDGLPWEYHP QVTDGHRYYF VRRRKVSANC KGKRPSRTID CGWWRSDTGD  120
KEIARRGAVV GFKKTLSFFL YKDQAKKRNE AQKSGWIMHE YRLAGGDEFQ EWALCKLYNK  180
PIKNSKPTKK INTVETIGSM ACETAAIQLQ STLPDVNYCH ELKEYEFLED AEYTEETISP  240
MISETATIQS QSILPEVNHS HGLEEYALLE DAEYMEEMGN WFSDFMRREE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-19171806168Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_113.36
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891648.10.0NAC domain-containing protein 102-like
STRINGevm.model.supercontig_113.360.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.17e-23NAC domain containing protein 102