PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_112.58
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 321aa    MW: 36170.2 Da    PI: 9.7224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_112.58genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-092974346
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                  +WT+eE + + +a + + ++   +W+++a++++ g+t  +++  ++ 
  evm.model.supercontig_112.58 29 KWTPEENKMFENALAVYDKDtpdRWHKVAAMIP-GKTVGDVIRQYRE 74
                                  8********************************.*******999986 PP

2Myb_DNA-binding45.71.5e-14135179347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  evm.model.supercontig_112.58 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 179
                                   8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-42374IPR009057Homeodomain-like
PROSITE profilePS512938.7922580IPR017884SANT domain
SMARTSM007173.4E-102678IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-112880IPR009057Homeodomain-like
PfamPF002499.2E-82974IPR001005SANT/Myb domain
CDDcd001671.03E-82975No hitNo description
Gene3DG3DSA:1.10.10.608.9E-13126184IPR009057Homeodomain-like
PROSITE profilePS5129420.728128184IPR017930Myb domain
SuperFamilySSF466897.48E-17129183IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17131183IPR006447Myb domain, plants
SMARTSM007173.2E-13132182IPR001005SANT/Myb domain
PfamPF002495.8E-13135179IPR001005SANT/Myb domain
CDDcd001672.14E-11135180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKYEMEILSP TSYLSSSSWL LEESKNPTKW TPEENKMFEN ALAVYDKDTP DRWHKVAAMI  60
PGKTVGDVIR QYRELEVDVS NIEAGLIPIP GYSTSPFTLE WVNNGYDGFK QSYGVNGKRS  120
SSARPSEQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVITRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLDDMRTPS PENKRPATPD QAVVFSGQPN SGNNLARTHF  240
SWSQTGSNGA NTMNYNSSMQ ANNSNNNKMV IPSNSPYGIH SHGLKIHGQN LHSRGPAHYD  300
SYYGPQNLIF HMNSGQHYSH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1630951176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_112.58
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891778.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-136DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9SHX61e-163B9SHX6_RICCO; DNA binding protein, putative
STRINGevm.model.supercontig_112.580.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-103Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]