PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_112.58 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36170.2 Da PI: 9.7224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 29 | 74 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE + + +a + + ++ +W+++a++++ g+t +++ ++ evm.model.supercontig_112.58 29 KWTPEENKMFENALAVYDKDtpdRWHKVAAMIP-GKTVGDVIRQYRE 74 8********************************.*******999986 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky evm.model.supercontig_112.58 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 179 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 23 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.792 | 25 | 80 | IPR017884 | SANT domain |
SMART | SM00717 | 3.4E-10 | 26 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-11 | 28 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-8 | 29 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-8 | 29 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-13 | 126 | 184 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.728 | 128 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-17 | 129 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-17 | 131 | 183 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-13 | 132 | 182 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-13 | 135 | 179 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-11 | 135 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MKYEMEILSP TSYLSSSSWL LEESKNPTKW TPEENKMFEN ALAVYDKDTP DRWHKVAAMI 60 PGKTVGDVIR QYRELEVDVS NIEAGLIPIP GYSTSPFTLE WVNNGYDGFK QSYGVNGKRS 120 SSARPSEQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVITRTPT QVASHAQKYF 180 IRQLSGGKDK RRASIHDITT VNLDDMRTPS PENKRPATPD QAVVFSGQPN SGNNLARTHF 240 SWSQTGSNGA NTMNYNSSMQ ANNSNNNKMV IPSNSPYGIH SHGLKIHGQN LHSRGPAHYD 300 SYYGPQNLIF HMNSGQHYSH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-16 | 30 | 95 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_112.58 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891778.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-136 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | B9SHX6 | 1e-163 | B9SHX6_RICCO; DNA binding protein, putative | ||||
STRING | evm.model.supercontig_112.58 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-103 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_112.58 |
Publications ? help Back to Top | |||
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