PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_112.44
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 525aa    MW: 58331.3 Da    PI: 7.7736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_112.44genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17148194148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g WT eEd +l+++v+q+G + W+ Ia+++  gR +kqc++rw+++l
  evm.model.supercontig_112.44 148 KGQWTDEEDRKLIKLVRQYGVRKWAQIAEKLD-GRAGKQCRERWHNHL 194
                                   799*****************************.*************97 PP
2Myb_DNA-binding56.75.4e-18200242145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   +++W++eE++ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  evm.model.supercontig_112.44 200 KDSWSEEEEKMLVKAHAKVGNR-WAEIAKLIP-GRTENSIKNHWN 242
                                   679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.573143198IPR017930Myb domain
SMARTSM007175.8E-17147196IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-29147241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27149201IPR009057Homeodomain-like
PfamPF139216.6E-21151211No hitNo description
CDDcd001671.12E-15151194No hitNo description
PROSITE profilePS5129420.558199249IPR017930Myb domain
SMARTSM007172.1E-17199247IPR001005SANT/Myb domain
CDDcd001671.67E-13202245No hitNo description
Gene3DG3DSA:1.10.10.601.3E-21202247IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEEGGGGGVD GGCGSLQNKP VLYKPSPPLT AIDRFLWGQS QIISVQKQTD RHRSQQVEEK  60
ENVICADGMC SFSMCSGGST GVGAGRFSPL PSNCNQEDSF VDGLYSGESN LNWSGSRQDK  120
RNRKMGLKER KVAGKKRSKK ASSVILIKGQ WTDEEDRKLI KLVRQYGVRK WAQIAEKLDG  180
RAGKQCRERW HNHLRPDIKK DSWSEEEEKM LVKAHAKVGN RWAEIAKLIP GRTENSIKNH  240
WNATKRKQNS RRKTRQSSAP NNNNKNPNGK PQSSVLQDYI RSKTLNQSSP KLLTPTNSST  300
HFITARQINL PEQSESTITN DYHSSNSASS PAPLLSYDHN NTACDDELLF IQNLFANDPH  360
HYHQLYSNHD NRVFPIDDNS NPLMEVALAE SFDADHNLVT TTSTAGNDGV RHDHQQQLAE  420
TGYPDYYNHL QAAEENNNNT QTTHLHSDLY LSFLLNGYSA TSSYPSSSNF LLGYGGCNGS  480
DHATDDQLLA CQAATNSSSS CGRKEMDLIE MVSSSQISQC SNFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-451452481104C-Myb DNA-Binding Domain
1msf_C1e-451452481104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_112.44
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891724.10.0transcription factor MYB119-like
STRINGevm.model.supercontig_112.440.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-73myb domain protein 119