PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_111.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Dof | ||||||||
Protein Properties | Length: 476aa MW: 51694.9 Da PI: 7.9299 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 8e-40 | 126 | 186 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss evm.model.supercontig_111.11 126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 186 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-31 | 119 | 183 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-32 | 128 | 184 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.826 | 130 | 184 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 132 | 168 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MQDPAITLFG KKIQLPADGE IPTLSGDDSD SPITIGLEKE MSGRDGEEEE KLDKDSLTQK 60 AISAPQQDDT KPVNKEESTT TESLPESGVN PETQSVDEET GKSKTAKAEK AKNDLSNSQE 120 KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR 180 KNKNSSSHYR HITISEALQA ARIDVPNGVN QHALKSNGRV LSFGLDAPIC DSMASVLKLR 240 NKKTLNGGRN GFSNVEEQKI PGPCRGGENG DDCSSGSSIT VSNSMEEGGR NCAQEPLMRS 300 INGFPSSIPC LPGVPWPYPW NSIPPPGFCP SGYPMSFYPT GYWNCAIPGA WNAPWLSPQP 360 STTCSNQNGP SSPLGKHSRE GETLKRDELE KEEPPKQKNG SVLVPKTLRI DDPTEAAKSS 420 IWATLGIKNE SLSRGGLFKA FQPKKNEKNH VAEASPVLCA NPAALSRSLK FHESS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_111.11 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891866.1 | 0.0 | cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 1e-122 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A067ENU3 | 0.0 | A0A067ENU3_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_111.11 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-115 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_111.11 |
Publications ? help Back to Top | |||
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