PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_110.11
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 362aa    MW: 41182 Da    PI: 6.042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_110.11genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  evm.model.supercontig_110.11 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                                  678*******************************************97 PP
2Myb_DNA-binding46.39.6e-1567110146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  evm.model.supercontig_110.11  67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                                   788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.883961IPR017930Myb domain
SuperFamilySSF466896.36E-2912108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
CDDcd001677.21E-111761No hitNo description
PROSITE profilePS5129424.35362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007172.4E-1366114IPR001005SANT/Myb domain
PfamPF002499.0E-1467111IPR001005SANT/Myb domain
CDDcd001673.88E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLI NNYNNIQVKQ EKDCTDQTSH STLIKPFTNS HEPAFLVNND STTSNYQQDA  180
LRQDQQFLMN KPVVAYDPLS YFDLPDVPIT GYTTISSYVP QNQPTILRSV AFDHTQFETS  240
SNFTFSSMPS LVNFHDYGNM SGTEFSDNSF LLNEAKESSS NSSNITTTTT TALTSNMVEN  300
NGAFSWENDN KLDCMFQPSN SWRDQDEQLQ SQTCVDLSSF PLASLSEDLT GPNFDRVFHH  360
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_110.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891894.10.0protein ODORANT1-like
TrEMBLA0A061FTT71e-147A0A061FTT7_THECC; Myb domain protein 86
STRINGevm.model.supercontig_110.110.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.18e-85myb domain protein 86