PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_11.52
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 410aa    MW: 46399.4 Da    PI: 6.1257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_11.52genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.56.8e-46601872128
                          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratks 80 
                                  p G+rF+P+deelv +yL++kv++ +l+  +vi++v++yk+ P dL +   ++ +++kewyfFs+rd+ky++g+r+nra+ +
  evm.model.supercontig_11.52  60 PSGYRFKPNDEELVFDYLRPKVKNMRLPP-NVIRDVEVYKFSPDDLAAkfaTIGKHQKEWYFFSPRDRKYRNGDRPNRAAGD 140
                                  89************************999.99**************843556666889************************ PP

                          NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  gyWkatg dk++++ ++++vg ++ Lvfy+g+a+ g+ktdW+mhey++
  evm.model.supercontig_11.52 141 GYWKATGGDKRIFK-GEKEVGSRRALVFYRGKAQAGSKTDWIMHEYNF 187
                                  **************.999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5250222IPR003441NAC domain
PROSITE profilePS5100551.66359222IPR003441NAC domain
PfamPF023659.7E-2460186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MENHQQLNRE VAASKTSANS PGDAMHGGSN SSAAASKGFV SHADQTYNYG DVEVYFASFP  60
SGYRFKPNDE ELVFDYLRPK VKNMRLPPNV IRDVEVYKFS PDDLAAKFAT IGKHQKEWYF  120
FSPRDRKYRN GDRPNRAAGD GYWKATGGDK RIFKGEKEVG SRRALVFYRG KAQAGSKTDW  180
IMHEYNFKES EDQEGVSNPS KKKRGENSMR LDGWVLCRIY KKTKKYSNRV SSRQQDAAND  240
DINSDQNGLQ KPNNQLENNY TSQVPIENGV AEITLMPSNV YNMSIAASTT YNDNDMVLNQ  300
YSRIEMYNQS MDSHNNIMLP QMPFDQYSNL LDHHSMAAYP FPMKGSFKNE ELADFSNFSS  360
LDSTFLDMTI DSDLSPLDCL SQFDNSDQPL YMTSLDNIVA APVSSSDIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-475922815174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_11.52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906243.10.0NAC transcription factor 29-like
TrEMBLV4UVG09e-65V4UVG0_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_11.520.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-55NAC domain containing protein 25