PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1097.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 190aa    MW: 22473.3 Da    PI: 7.9102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1097.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-141461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd +l + +   G  +W+t+++  g+ R++k+c++rw +yl
  evm.model.supercontig_1097.3 14 RGPWTIEEDHKLMNFILNNGIQCWRTVPKLAGLLRCGKSCRLRWINYL 61
                                  89******************************99************97 PP

2Myb_DNA-binding50.45.1e-1668110246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g + + E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
  evm.model.supercontig_1097.3  68 GGFMESEENQIIELHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                                   556689***************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.51961IPR017930Myb domain
SuperFamilySSF466895.24E-2811108IPR009057Homeodomain-like
SMARTSM007174.7E-61363IPR001005SANT/Myb domain
PfamPF002496.1E-121461IPR001005SANT/Myb domain
CDDcd001674.19E-41661No hitNo description
PROSITE profilePS5129424.52362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2564117IPR009057Homeodomain-like
SMARTSM007172.4E-1466114IPR001005SANT/Myb domain
PfamPF002491.1E-1467110IPR001005SANT/Myb domain
CDDcd001672.72E-1072110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIQCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF MESEENQIIE LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHKPIT DRDDEADHAQ KETLQEIRTS NKKMKEEEEE DDQGMKYFIE EESFDFEQWL  180
ISTSRDSNQX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1097.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896080.11e-140myb-related protein 315-like, partial
SwissprotQ9C7U71e-73MYB20_ARATH; Transcription factor MYB20
TrEMBLB9GIZ95e-92B9GIZ9_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_1097.31e-138(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-86myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]