PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_109.32
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 229aa    MW: 25504.8 Da    PI: 5.3838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_109.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1966117156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   + y+GVr ++ +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a+++++ge
  evm.model.supercontig_109.32  66 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALCIKGE 117
                                   68*****998.**********843...6************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1366117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3167125IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2167125IPR016177DNA-binding domain
PROSITE profilePS5103223.06467124IPR001471AP2/ERF domain
SMARTSM003801.7E-3567130IPR001471AP2/ERF domain
PRINTSPR003672.3E-106879IPR001471AP2/ERF domain
CDDcd000185.29E-3268124No hitNo description
PRINTSPR003672.3E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSPPSPSS LQPSHDQSPL QISIEPETAT CNSSMSPSPP SPSSNPLPKL SDEPKLPRHH  60
RSRKHPVYRG VRMRSWGKWV SEIRQPRKKS RIWLGTFPTP EMAARAHDVA ALCIKGESAI  120
FNFPRLVNLF PRPVSLMPRD IQAAAAQAAA MAEFNTLPSS SSSSSNDSES EELEEIVQLP  180
NIDGSYELGE LIMIEEEERW VYPPLEDFCR EFSGEIMAAE RLIRSDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19651291277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_109.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891938.11e-165ethylene-responsive transcription factor ERF036
SwissprotQ9LYD38e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2QNZ78e-69A0A0D2QNZ7_GOSRA; Uncharacterized protein
STRINGevm.model.supercontig_109.321e-164(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]