PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_109.22
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 662aa    MW: 73050.5 Da    PI: 6.4165
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_109.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-191775357
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  evm.model.supercontig_109.22 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                                  5679*****************************************************97 PP
2START86.75e-281612852124
                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l
  evm.model.supercontig_109.22 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVL 240
                                   7899******************************************************.8888888888************ PP

                                   EEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EE CS
                         START  83 evissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwv 124
                                   +v+ ++  g+++l +++l+a+++l+p Rdf+ +Ry+  l++g+++
  evm.model.supercontig_109.22 241 NVLPTAngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLA 285
                                   ****9999*******************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
CDDcd000866.09E-171777No hitNo description
SuperFamilySSF466894.71E-171780IPR009057Homeodomain-like
PfamPF000462.2E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-181975IPR009057Homeodomain-like
CDDcd146868.48E-769108No hitNo description
PROSITE profilePS5084811.543151282IPR002913START domain
SuperFamilySSF559612.06E-17152284No hitNo description
SMARTSM002346.1E-4160363IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-7160284IPR023393START-like domain
PfamPF018525.7E-25161285IPR002913START domain
PfamPF086704.4E-53518660IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAMSCKDGKL GNMDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQNTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLANVPPA ILLRFLREHR  300
SEWADNNIDA YSAAAVKVGP YSIPGSRVGG FGGQVILPLA HTIEHEEFLE VIKLEGVGHS  360
PEDTIIPRDV FLLQLCSGMD ENAVGSCAEL IFAPIDASFA DDAPLLPSGF RIIPLDSGKE  420
TSSPNRTLDL ASALEIGPAG NKASNDYSGN SNCTRSVMTI AFEFAFESHM QEHVASMARQ  480
YVRSIISSVQ RVALALSPSH LSSHAGLRTP LGTPEAQTLA RWICQSYRCY LGVELLKSSN  540
EGSETILKTL WHHSDAIMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDDHGR  600
KTLCSEFPQI MQQGFAYLQG GICLSSMGRP VSYEKAVAWK VLNEEENAHC VCFMFVNWSF  660
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_109.22
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891939.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0V0IVI90.0A0A0V0IVI9_SOLCH; Putative homeobox-leucine zipper protein ATHB-14-like
STRINGevm.model.supercontig_109.220.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]