PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_108.62 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18470.8 Da PI: 8.5914 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.8 | 2.2e-44 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ evm.model.supercontig_108.62 11 PCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLHEVMPHQREDAVNSLAYEAEARMKDPVYGCVGAIS 91 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq+q+++l+ el+++++ evm.model.supercontig_108.62 92 VLQRQVMKLQRELDATNA 109 *************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.494 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-44 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MASSSGYSNS PCAACKFLRR KCLPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLHEVM 60 PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVMKL QRELDATNAD LMRFAACNES 120 FPTTTQQFGR RSGHGGPNSS FDAHSTGSGF YYPNSQWNNG PGGGRGKGI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-63 | 2 | 119 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-63 | 2 | 119 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_108.62 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892012.1 | 1e-126 | LOB domain-containing protein 25 | ||||
Refseq | XP_021892013.1 | 1e-126 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 1e-71 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | B9GI56 | 4e-86 | B9GI56_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_108.62 | 1e-125 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-74 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_108.62 |
Publications ? help Back to Top | |||
---|---|---|---|
|