PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_108.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 504aa MW: 55086.6 Da PI: 6.5818 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 234 | 266 | 15 | 48 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +v ++G++ W+ Ia+++ gR +kqc++rw+++l evm.model.supercontig_108.29 234 LVGRFGTKKWSQIAKMLR-GRVGKQCRERWHNHL 266 7889**************.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.2e-15 | 272 | 314 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd++l++a+++ G++ W+ r+++ gR+++ +k++w+ evm.model.supercontig_108.29 272 KEEWTEEEDLILINAHQEIGNR-WAEMTRRLP-GRSENTIKNHWN 314 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.093 | 229 | 268 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-8 | 233 | 266 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-8 | 233 | 266 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 233 | 274 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.13 | 233 | 266 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.96E-25 | 246 | 320 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.845 | 267 | 321 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 271 | 319 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-13 | 272 | 314 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.33E-11 | 274 | 317 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 275 | 319 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MDSTFREEYP FLSSLLYDNP TKPVLENDFT IDGFKLSNYN YSSSSSSSSV SSSSTPKGLF 60 HHLHSVNNFQ SNPVNGSSPP FRLNQFSTEG SAKNPLFGLS STCSSDPFEP YTNGFSSFSN 120 DNLLINPPAA ATGYNGSTKV YNLSDSVNSS VLHGLQGKTS LSWDFNLPEI GSKPITGTGQ 180 IYSPALGLIS GDQGSASGYK VPDEASGIVG VNGYRENAND AEKKEMVTNK KPQLVGRFGT 240 KKWSQIAKML RGRVGKQCRE RWHNHLRPDI KKEEWTEEED LILINAHQEI GNRWAEMTRR 300 LPGRSENTIK NHWNATKRRQ SSSRRSGKNS GKPKHEMLQN YIRTVTASGS SSTYSNTTYN 360 QKIPVVPAGA GGFIGSGTLP NSGYGGWPFT LAPASNENND QGIDFSYDGG SSMEVNEGSE 420 RSSYGYGGYP MVDDGMEIGS GHANGSGSAE SVYNASRGME FDMGARMDED QVYHQNNWMA 480 MHGGEQEMRK EMDLLEMLSH GKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-38 | 233 | 320 | 17 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-38 | 233 | 320 | 17 | 104 | C-Myb DNA-Binding Domain |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_108.29 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | evm.model.supercontig_108.29 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6052 | 26 | 43 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 3e-52 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_108.29 |