PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.91
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 631aa    MW: 68527.3 Da    PI: 7.144
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.91genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.31.3e-1062576282374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                   +++++e A a+s+g++  a+++Lar     +p++++ q+l  +++ AL++r++     + +  p+ e      +++++++ 
  evm.model.supercontig_107.91 257 RQTIMETASAISEGKTDVASEILARFPLAPNPTANSEQKLMEFILSALKSRVNP----VENPPPVAEL---YGKDHVNSTP 330
                                   6899*************************************************9....4444444444...499******* PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeel 158
                                   l++e+sP++k+++++aN aIlea+ ++   +  H+iDfdi+qG Q++ L++aL++R++g+p  ++iT+v+++  g   e+ 
  evm.model.supercontig_107.91 331 LLYELSPCFKLGFMAANLAILEATLEQpsnNGFHVIDFDIGQGEQYIHLFHALSARQNGKPaVVKITAVVDNVGGvGDERF 411
                                   ***********************9988776788************************7777699*******7776999*** PP

                          GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                   + +ge L++ Ae++gv ++fnv+++++l++l+ e+L ++p+E laVn++++l+r++desvs+e++rde+L+ vk+l P+vv
  evm.model.supercontig_107.91 412 RVVGEVLTQKAERFGVCLKFNVVTSSKLSNLSRESLGCEPDEPLAVNFAFKLYRVPDESVSTENPRDELLRRVKGLAPRVV 492
                                   ********************************************************************************* PP

                          GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                                   ++veqe++ n+++Fl r+ e++ yy al+ds+e+++pr++ +r+kvE++ lgr++ n vaceg++r+er+e ++kWr+r++
  evm.model.supercontig_107.91 493 TLVEQEMNANTAPFLSRVGETCAYYGALLDSIESTVPRDNPDRVKVEEA-LGRKLANSVACEGRDRVERCEVFGKWRARMG 572
                                   *************************************************.******************************* PP

                          GRAS 321 eaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   +aGF   p+s+ +a+++++ l   +   +g++v+ee+g +++gW++r+L+++SaWr
  evm.model.supercontig_107.91 573 MAGFVLKPMSQAIAESMRARLTSGNrvHRGFTVKEENGGVFFGWMGRSLTVASAWR 628
                                   *****************998877665789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.226230606IPR005202Transcription factor GRAS
PfamPF035144.4E-104257628IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MASGFSGGGP EFYAGINGRS MVGNAMNTGN PSEAPYRSQL PGIFFDQTAQ IANRTGTALP  60
SFIGKRTLAD FQAQQSQHHQ SSALNALLLR SVKARTYPLA STLSPLSSSM DYSMNMSTDI  120
ASIAATSGLS QRYGLSSSRS RVTRVFRLFR ILTRFSQESQ PAQDTEKKMM NPLRELEKQL  180
LEDNDDEEGD ALSVITNTNS EWSETIQNLI SGQSPAPSPN PNPNPNPNPI PNSPSPTTSP  240
SSSSSSSVAS PVSVCSRQTI METASAISEG KTDVASEILA RFPLAPNPTA NSEQKLMEFI  300
LSALKSRVNP VENPPPVAEL YGKDHVNSTP LLYELSPCFK LGFMAANLAI LEATLEQPSN  360
NGFHVIDFDI GQGEQYIHLF HALSARQNGK PAVVKITAVV DNVGGVGDER FRVVGEVLTQ  420
KAERFGVCLK FNVVTSSKLS NLSRESLGCE PDEPLAVNFA FKLYRVPDES VSTENPRDEL  480
LRRVKGLAPR VVTLVEQEMN ANTAPFLSRV GETCAYYGAL LDSIESTVPR DNPDRVKVEE  540
ALGRKLANSV ACEGRDRVER CEVFGKWRAR MGMAGFVLKP MSQAIAESMR ARLTSGNRVH  600
RGFTVKEENG GVFFGWMGRS LTVASAWRLT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-352156302421Protein SHORT-ROOT
5b3h_E2e-352156302421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.91
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892171.10.0LOW QUALITY PROTEIN: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1R3IN330.0A0A1R3IN33_COCAP; Transcription factor GRAS
STRINGevm.model.supercontig_107.910.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Representative plantOGRP7599918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8