PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.48
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 313aa    MW: 35208.7 Da    PI: 6.71
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.2e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd llv+++k++G g+W+t ++  g+ R++k+c++rw +yl
  evm.model.supercontig_107.48 14 KGAWSPEEDRLLVQYIKEHGHGSWRTLPKLAGLSRCGKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding53.36.2e-1767111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++++eE+  +++++ +lG++ W++Ia++++ gRt++++k++w++ 
  evm.model.supercontig_107.48  67 RGPFSPEEESAIIQLHYMLGNR-WAAIASHLP-GRTDNEIKNFWNTN 111
                                   89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.682965IPR017930Myb domain
SuperFamilySSF466894.03E-3112108IPR009057Homeodomain-like
SMARTSM007173.4E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001672.59E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2665114IPR009057Homeodomain-like
PROSITE profilePS5129419.00166116IPR017930Myb domain
SMARTSM007172.8E-1766114IPR001005SANT/Myb domain
PfamPF002495.0E-1667112IPR001005SANT/Myb domain
CDDcd001675.89E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRTPCCDRE KLKKGAWSPE EDRLLVQYIK EHGHGSWRTL PKLAGLSRCG KSCRLRWTNY  60
LRPDIKRGPF SPEEESAIIQ LHYMLGNRWA AIASHLPGRT DNEIKNFWNT NLKKPLLAAK  120
DQTIVHSPST YEPGTLNSES PLTRHMIQWE SKGNRVEAEA RLSMESSSVA KAECDIFLKL  180
WNSEVGESFR KSLKPLEEND EACESLFSGK SLSKMSEPDS NLIVRARHTA AGTSIDSTDK  240
QYDRNKPNAE ILAGSDSIAS DHEFLDSSDT ELKMMFDLPG GSYIEFLQGK TDNFLSFVDL  300
QCDRKCNSLA FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.48
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892183.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-91MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A067JEP11e-115A0A067JEP1_JATCU; MYB family protein
STRINGevm.model.supercontig_107.480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2750133
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-94myb domain protein 17